BAC Information

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BAC

Clone NameMSMg01-492P13
Chromosome8 (Build37)
Map Location 85,244,001 - 85,244,375
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15, EG666564
Downstream geneLOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492P13.T7 (MSMg01no492_p13.b1)MSMg01-492P13.TJ (MSMg01no492_p13.g1)
ACCAG570601AG570602
length711788
length of high quality
(start - end)
615 (74 - 688)---
definitionCHROMAT_FILE: MSMg01no492_p13.b1 PHD_FILE: MSMg01no492_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:20 2005CHROMAT_FILE: MSMg01no492_p13.g1 PHD_FILE: MSMg01no492_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCNAAGTTTTGCCTTAGAATCTGAGACCCAAAATTATCATTTGCATCAA
TAGCCCAGCTTCTCTATTTTTCTACTATGCACAGTGGAGTAAATGTGATA
TACATCTCAGGGTTACTGTGAGGATAATAGAGAAACAGTGGCAAAATGCC
CAGGAGAGACTTACTAATGCATAGCTTTCATTATTCACTCCACAGACATC
TAACTGACAAGATGGCTCAGTGTTCAATCTGTTACCAAGCAAAAGATTTT
TATCTAAATCTTTTTTTTTTCTTGAGGGCATAACAATTCTGTCAGAAATG
AAAAGCCAGAGAAAAAATTGCTTTTTAAATAACTTAATTGGTTAAACTGT
GTAAATAGTGAAATAATTGTGGGAGATTGGCTAATTCTGTCGTTTTTGTT
TGTGTTCCCTGGTGATAAACGTTTCTTCTTTTTTGATATTGTAGGTGTTT
AATTCACATTTGTTTGACAGGCTTCTTTTGAGGAATCTCATGGGTAGAGA
AAGCCAGTGTGTGTTTGGGGGTGGGGAGAAAGAATCTTAGCCACAGAGCT
TTACAGTCTTCAAAATAACTTCTAGGTACACACTGCATCACTGAGCTGCA
CTCCCAACCCCAGTATCTCATGAGGCACAAATGGGTGTGAAGGCATGAGA
GTGTCCTAACA
TAACGGAAAGGGAGGGGCTGTTTCAAAAAGGGNGAGNGGGTAGTTCCAAA
AAGACTAAGAGTCCGGGCAAAGACAACAATTGACATTCTTCCCAAAAAAT
ATATCGCTGCCCCTGCGACCCCGGTACTCCCTTACTCCCCACGACATCTG
CAGGCTACCTGGCTTTATCTAGTACCTCTTCTTTTCATTGGCCGAGATTT
CATAATGCTATGGTGCCCATAATTGTTGTGACCCGTATAGTAGAAGGGAA
GGCCTAGACAGGACACTCCATCTGCACATGTTCTTTTGCTCACAAACCCC
GCCCAGGGCTACAACTGCCTTCCTCAGCTTCGGTGTCCATACCAGCTTGG
TACTGGTTACTCATAATTCTGAGTGTGTGCAAATCGCGCGATGGGCGTCA
TTCGCACCCCAACTAAACCTAGCCATAGTCACTCCACGCGCAGACACTGG
CGGTATCTCTATTACGCCCTACTACGCACACCGCGTAGCCCTCTTCTTGA
ACGTTACCCTGGTTCATTCCCACACCCCCGCATATCCTTACTCCACAGCG
TTCACCAGCAAAAATCTTAACTTGACTCTGTACCTCGCTCGGCTTCACGA
TTCTGCCTCATTCCAATCACGCTATTATTATCATACGCATCGATNCTGTG
ACTCGTCTCTTTGATTATACGCGATGAATCCACTTCCAATCTTGCTTTTA
CCGGAACATATGTCATCGTGAGCCCTTAGCCCTCGAATTAACCACATCCC
ATCGAGCGTATCTTTCGAGAAAACTGTCCCAACAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_p13.b1 MSMg01no492_p13.b1 CHROMAT_FILE:
MSMg01no492_p13.b1 PHD_FILE: MSMg01no492_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:20 2005
         (615 letters)



>mm_chr8_85243561_85244575
          Length = 1015

 Score =  725 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 241 tttttttcttgagggcataacaattctgtcagaaatgaaaagccagagaaaaaattgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttcttgagggcataacaattctgtcagaaatgaaaagccagagaaaaaattgctt 500

                                                                       
Query: 301 tttaaataacttaattggttaaactgtgtaaatagtgaaataattgtgggagattggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaataacttaattggttaaactgtgtaaatagtgaaataattgtgggagattggcta 560

                                                                       
Query: 361 attctgtcgtttttgtttgtgttccctggtgataaacgtttcttcttttttgatattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attctgtcgtttttgtttgtgttccctggtgataaacgtttcttcttttttgatattgta 620

                                                                       
Query: 421 ggtgtttaattcacatttgtttgacaggcttcttttgaggaatctcatgggtagagaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgtttaattcacatttgtttgacaggcttcttttgaggaatctcatgggtagagaaag 680

                                                                       
Query: 481 ccagtgtgtgtttgggggtggggagaaagaatcttagccacagagctttacagtcttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccagtgtgtgtttgggggtggggagaaagaatcttagccacagagctttacagtcttcaa 740

                                                                       
Query: 541 aataacttctaggtacacactgcatcactgagctgcactcccaaccccagtatctcatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aataacttctaggtacacactgcatcactgagctgcactcccaaccccagtatctcatga 800

                          
Query: 601 ggcacaaatgggtgt 615
           |||||||||||||||
Sbjct: 801 ggcacaaatgggtgt 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)