Query= MSMg01no493_k10.b1 MSMg01no493_k10.b1 CHROMAT_FILE:
MSMg01no493_k10.b1 PHD_FILE: MSMg01no493_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:16 2005
(533 letters)
>mm_chr8_80904340_80905272
Length = 933
Score = 975 bits (504), Expect = 0.0
Identities = 529/546 (96%), Gaps = 17/546 (3%)
Strand = Plus / Minus
Query: 1 ctacagcacttacaacaataacaacaacaaaagccagatactcaaggcagctcttctaaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctacagcacttacaacaat---aacaacaaaagccagatactcaaggcagctcttctaaa 765
Query: 61 accaccagtcagtttgagg------------tgggggacagctaatccggagttgcatcc 108
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 764 accaccagtcagtttgaggtgacagccaagctgggggacagctaatccggagttgcatcc 705
Query: 109 tgtaactcacctttatttcattgaattttaactcagctctggatggattcagtgtcatga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgtaactcacctttatttcattgaattttaactcagctctggatggattcagtgtcatga 645
Query: 169 agtcagaggaggagggaatacggcaatttattcatgctttccactggagttccattgcag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agtcagaggaggagggaatacggcaatttattcatgctttccactggagttccattgcag 585
Query: 229 acaggaaatttctctaaaaatgcaaatcacttggtgccacataagtgtgacttgccagct 288
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 584 acaggaaatttctctaaaaatgcaaatcacttggtgccacat-agtgtgacttgccagct 526
Query: 289 gaagcactcagaggaaaggcccgtcccagggctaatgtttttatgctctgtgattgaata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaagcactcagaggaaaggcccgtcccagggctaatgtttttatgctctgtgattgaata 466
Query: 349 aatcgacccacttattacaccatcttcacctaaatttttatttttaagccctagccctag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aatcgacccacttattacaccatcttcacctaaatttttatttttaagccctagccctag 406
Query: 409 atgaatgtgtctaggggtagt-ggggggggggcttttctctaacactcagaaaatgaatt 467
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgaatgtgtctaggggtagtgggggggggggcttttctctaacactcagaaaatgaatt 346
Query: 468 acacttgttaatttgactttgaatcctagatatatcaaaataaataccataaacaagtgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acacttgttaatttgactttgaatcctagatatatcaaaataaataccataaacaagtgt 286
Query: 528 tgaaga 533
||||||
Sbjct: 285 tgaaga 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_k10.g1 MSMg01no493_k10.g1 CHROMAT_FILE:
MSMg01no493_k10.g1 PHD_FILE: MSMg01no493_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:16 2005
(585 letters)
>mm_chr8_80736626_80737610
Length = 985
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%)
Strand = Plus / Plus
Query: 1 acacgggtcaaatggagttactttaaagctacaaaatgaattcctgagaacagatgaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacgggtcaaatggagttactttaaagctacaaaatgaattcctgagaacagatgaggc 260
Query: 61 tctcctggtgtagacaagagatggtgttggctataggtagtcacaataatcaattgcata 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tctcctggtgtagacaagagatggtgctggctataggtagtcacaataatcaattgcata 320
Query: 121 ttcacaaggaataattgaatgcatggaaatactgaaaaaaggaaacaactcaggggcatt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacaagaaataattgaatgcatggaaatactgaaaaaaggaaacaactcaggggcatt 380
Query: 181 cagaaggcgcttggattgtgggaatttctctggcgggttcactggaggaaccagatcctc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaggcccttggattgtgggaatttctctggcgggttcactggaggaaccagatcctc 440
Query: 241 ttgcaggccacgcccactcactaacaggcccactctccaagcaccgcccccacacttgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ttgcaggccacgcccactcactaacaggcccactctccaagcaccgccccctcacttgaa 500
Query: 301 gagtcttggagctgaccaatcctaaagcccattttagcctaactacgcctccatctggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtcttggagctgaccaatcctaaagcccattttagcctaactacgcctccatctggcc 560
Query: 361 ggccgagcccctctgtttccatggagacgctttcagcgtcccctgtctgcaccaagccag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgccgagcccctctgtttccatggagacgctttcagcgtcccctgtctgcaccaagccag 620
Query: 421 gccaacaatctgggatgagagtacctcacccagcacccaccgcctgcagaagcttagtca 480
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 621 gccaacaatctgggatgagagtaccgcgcccagcacccaccgcctgcagaagcttagtca 680
Query: 481 gggacacagaatcacagtcccagagctagttttctaaggtttgtggggcaaggctgggga 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggacacagaatcacaggcccagagctagttttctaaggtttgtggggcaaggctgggga 740
Query: 541 caggacctggtcagctcccagaagagtgggcggctcctcctttcc 585
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 caggacctggtcagctcccagaagagtgggcggctcttcctttcc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
