Query= MSMg01no493_m02.b1 MSMg01no493_m02.b1 CHROMAT_FILE:
MSMg01no493_m02.b1 PHD_FILE: MSMg01no493_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:25 2005
(682 letters)
>mm_chr8_39410872_39411953
Length = 1082
Score = 1295 bits (670), Expect = 0.0
Identities = 675/678 (99%), Gaps = 3/678 (0%)
Strand = Plus / Plus
Query: 5 gaattcatggttggttgggtgaacttagtccactatgtctggtgaggtcatggagcctag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatggttggttgggtgaacttagtccactatgtctggtgaggtcatggagcctag 267
Query: 65 aggagaatttactattatcattttcctaaaccactataattttcaactacattctaaatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggagaatttactattatcattttcctaaaccactataattttcaactacattctaaatc 327
Query: 125 tttatctttatacccacagatatatagttattgttcatctctcaccaaaaaaaaaaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttatctttatacccacagatatatagttattgttcatctctcaccaaaaaaaaaaaaaa 387
Query: 185 aaaaaaaaaaaaaagtttctttgggcagcagatggaggtctttacagaaagccacaactg 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaaaaaaaa---gtttctttgggcagcagatggaggtctttacagaaagccacaactg 444
Query: 245 gttaaaattcacagatcaaccaactagtggtgtctcttcacaattaacatatttacagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttaaaattcacagatcaaccaactagtggtgtctcttcacaattaacatatttacagta 504
Query: 305 taatctttatacttaagtctcaaggaacattacagatgaggggaccaaaagattgttagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatctttatacttaagtctcaaggaacattacagatgaggggaccaaaagattgttagg 564
Query: 365 atcaaaggacaagaataagtgtaataaaacagcctcttgtttaaaaaaaataataataaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcaaaggacaagaataagtgtaataaaacagcctcttgtttaaaaaaaataataataaa 624
Query: 425 ggaccagaaagtgagggttggaaaagagccagaggtgaataagagcctttggaaggagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaccagaaagtgagggttggaaaagagccagaggtgaataagagcctttggaaggagga 684
Query: 485 atatgtgatcaagatagattcattaaattctcaaataattaataaggtatattagtaatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atatgtgatcaagatagattcattaaattctcaaataattaataaggtatattagtaatt 744
Query: 545 attttaattatgaatgaatttataaggtaataagtaggaagaagtagaaaaatgaaatga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attttaattatgaatgaatttataaggtaataagtaggaagaagtagaaaaatgaaatga 804
Query: 605 atataaaatttacaagtaatatatagtcaagaaacatgaacaaatacaaaaacttcagta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atataaaatttacaagtaatatatagtcaagaaacatgaacaaatacaaaaacttcagta 864
Query: 665 ttcaataacatgctatgt 682
||||||||||||||||||
Sbjct: 865 ttcaataacatgctatgt 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_m02.g1 MSMg01no493_m02.g1 CHROMAT_FILE:
MSMg01no493_m02.g1 PHD_FILE: MSMg01no493_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:25 2005
(621 letters)
>mm_chr8_39552456_39553476
Length = 1021
Score = 1201 bits (621), Expect = 0.0
Identities = 621/621 (100%)
Strand = Plus / Minus
Query: 1 ctttaatccaagcactcaagttagagacaggtcaaaaactcatggtcatgctggcagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctttaatccaagcactcaagttagagacaggtcaaaaactcatggtcatgctggcagggg 762
Query: 61 gtacaagggacgttatttcagattaaaataacacaaaacaaacaaacaaaatgaaactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gtacaagggacgttatttcagattaaaataacacaaaacaaacaaacaaaatgaaactaa 702
Query: 121 tcttgacatcagtctgaaggcaggactcagcttcttcttcagtgtaaataaacacattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcttgacatcagtctgaaggcaggactcagcttcttcttcagtgtaaataaacacattta 642
Query: 181 catttaagtttacaaataagtaatgtccaaaactatttttggagaacagactttatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 catttaagtttacaaataagtaatgtccaaaactatttttggagaacagactttatatgt 582
Query: 241 tactataaacctggatattgaatacacggaaaacctcagcattcatgttaggaaacattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tactataaacctggatattgaatacacggaaaacctcagcattcatgttaggaaacattt 522
Query: 301 aatgagggaaaacatctattggcttctatctggatgttagttcatctctttattgagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aatgagggaaaacatctattggcttctatctggatgttagttcatctctttattgagtgt 462
Query: 361 gctttaatacctgttcccccccctcctttttttttttttaatttggtgtctctttggcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gctttaatacctgttcccccccctcctttttttttttttaatttggtgtctctttggcca 402
Query: 421 atgagagactgtctgattgtatagcttctacatttgaagggaactgacgactgctctgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atgagagactgtctgattgtatagcttctacatttgaagggaactgacgactgctctgat 342
Query: 481 tagccactttgtcaaatgtcagttgcaatcaatttggctgatggaaggagccttcgactc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tagccactttgtcaaatgtcagttgcaatcaatttggctgatggaaggagccttcgactc 282
Query: 541 ctgtcagagaatcagttttgtcagggagctgagcgccaggatgcagatcaatgcagtccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctgtcagagaatcagttttgtcagggagctgagcgccaggatgcagatcaatgcagtccc 222
Query: 601 acttgtttctcatctgaaact 621
|||||||||||||||||||||
Sbjct: 221 acttgtttctcatctgaaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
