BAC Information

Click to search

BAC

Clone NameMSMg01-493P16
Chromosome8 (Build37)
Map Location 34,400,891 - 34,533,721
singlet/doubletdoublet
Overlap geneWrn, Purg
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493P16.T7 (MSMg01no493_p16.b1)MSMg01-493P16.TJ (MSMg01no493_p16.g1)
ACCAG571368AG571369
length738728
length of high quality
(start - end)		635 (74 - 708)649 (78 - 726)
definitionCHROMAT_FILE: MSMg01no493_p16.b1 PHD_FILE: MSMg01no493_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:42 2005CHROMAT_FILE: MSMg01no493_p16.g1 PHD_FILE: MSMg01no493_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,400,891 - 34,401,525)(34,533,073 - 34,533,721)
sequence
GCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAACAGTTTCCTCCAGCGAGCAGTCAATAACCAATGGAATTCT
AACAGCTCAGTCCAGCTAGCAGTCAATAACCAATGGAATTCTAAGCTTCA
CCGGATTATTCTTTCATTTGATGTTAACTAATCTATTAACCAGATTTTCA
CACTGTCCCTATAAACTTTTAGATATAAATGAAAACTATTCTACCAAATA
AGTTATTCATCATTTCATTTTTTAAAAAGCCACCTTAAAATGGCAAATGT
AGGAAGGACGAAACTAAGGGTTGGTATAAAATTTGAGAACAGACAGTTAT
AAACAAATCATGGAAAGCTAATGTGCATGGGATTTGAGTATATATGACAT
AAAGGAAATTCCCTTTGTTTCTAAAATTGTAAAAAAGAAAATGGCTTTAT
GCATCAGTCTAACATATGAAGAGCTACAGAGGTCAGCCTCTGTGCCTGCC
ATACAGTAAAAATCCACTGTAAAATGGTCAGGAAGTAGCTATCTAGAAGT
CATTACATTTATGAATTCAGTCGGCACTCAACGAACACCCAACAAAAAGT
AATCAGCTCTAAGAGTCCAGATAAGTCTACACTGATGACAACATGCCTTT
CACTGTGCTAAGAAAGGGGAAGGTTCGAAGCATATGCCAGGCTTCTGAAT
TGTGACCAGGAAGGAGTCTATCAGTTCAGCTGTTAGAC

CCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTCCTCAGGATCCCAAATC
CAATATCCCAGGGACCTGGGAAAGCTCACTGTTATGGCAGATTTTGGAAG
TCTGGATAAAGCCAAGTCCAACACTTAGTAGAGATTTCTGAGTTGTTTTC
AGGAGAAAAGAATTCTATAATAGAATGAAGTGTGAATAACATTGGCCAGA
GGAAGAGATGGGGAGGCTAAAGATGAGTTCCAGAATGGATCCTATAGACA
TTCAGAATCCTGACACTACAGTGAAGTTTTCAGGGGATTTGACACCTCCT
TAGGTTTGAGGATAGCATATTCCACAAATGAGAATATTGCTTTGACCTAT
GTAATGTGTGAATGGACAGTAACTGCCAGTATTGAATAATAGGGCTCAGA
GCAGGTCAGGGCTGTGTTGCATGTACAATAGCCATATTGCTTGGTCCATA
TGATTGAATAGACCCAGTGGATTTCATGCTCTCTGTGTAGAAAAAAGATA
CAGTGGGCAAAATTGGAGCGTTAGTAGGTTCTACAGAGAGAATCAGCTCT
CACAATGCAGCCCCTTGGGATTCTGGGATAAAGCCATGCTAACCACTGCG
AGAAGAACCAGTAATGGGCATGCTATTGAGCCCTGGCAGAGATAATCATT
CTGGATTATGAGGAGAGAATTGCCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_p16.b1 MSMg01no493_p16.b1 CHROMAT_FILE:
MSMg01no493_p16.b1 PHD_FILE: MSMg01no493_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:42 2005
         (635 letters)



>mm_chr8_34400691_34401725
          Length = 1035

 Score = 1212 bits (627), Expect = 0.0
 Identities = 633/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgagcagtcaataaccaatggaattctaacagctcagtccagctagcagtcaataaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgagcagtcaataaccaatggaattctaacagctcagtccagctagcagtcaataaccaa 260

                                                                       
Query: 61  tggaattctaagcttcaccggattattctttcatttgatgttaactaatctattaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaattctaagcttcaccggattattctttcatttgatgttaactaatctattaaccag 320

                                                                       
Query: 121 attttcacactgtccctataaacttttagatataaatgaaaactattctaccaaataagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttcacactgtccctataaacttttagatataaatgaaaactattctaccaaataagt 380

                                                                       
Query: 181 tattcatcatttcattttttaaaaagccaccttaaaatggcaaatgtaggaaggacgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcatcatttcattttttaaaaagccaccttaaaatggcaaatgtaggaaggacgaaa 440

                                                                       
Query: 241 ctaagggttggtataaaatttgagaacagacagttataaacaaatcatggaaagctaatg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagggttgggataaaatttgagaacagacagttataaacaaatcatggaaagctaatg 500

                                                                       
Query: 301 tgcatgggatttgagtatatatgacataaaggaaattccctttgtttctaaaattgtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatgggatttgagtatatatgacataaaggaaattccctttgtttctaaaattgtaaa 560

                                                                       
Query: 361 aaagaaaatggctttatgcatcagtctaacatatgaagagctacagaggtcagcctctgt 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagaaaatggctttatgcatcagtctaacatatgaagagctacagaggtcagcctctgt 620

                                                                       
Query: 421 gcctgccatacagtaaaaatccactgtaaaatggtcaggaagtagctatctagaagtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgccatacagtaaaaatccactgtaaaatggtcaggaagtagctatctagaagtcat 680

                                                                       
Query: 481 tacatttatgaattcagtcggcactcaacgaacacccaacaaaaagtaatcagctctaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacatttatgaattcagtcggcactcaacgaacacccaacaaaaagtaatcagctctaag 740

                                                                       
Query: 541 agtccagataagtctacactgatgacaacatgcctttcactgtgctaagaaaggggaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtccagataagtctacactgatgacaacatgcctttcactgtgctaagaaaggggaagg 800

                                              
Query: 601 ttcgaagcatatgccaggcttctgaattgtgacca 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcgaagcatatgccaggcttctgaattgtgacca 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_p16.g1 MSMg01no493_p16.g1 CHROMAT_FILE:
MSMg01no493_p16.g1 PHD_FILE: MSMg01no493_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:42 2005
         (649 letters)



>mm_chr8_34532873_34533921
          Length = 1049

 Score = 1247 bits (645), Expect = 0.0
 Identities = 648/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttcctcaggatcccaaatccaatatcccagggacctgggaaagctcactgttatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 acttttcctcaggatcccaaatccaatatcccagggacctgggaaagctcactgttatgg 790

                                                                       
Query: 61  cagattttggaagtctggataaagccaagtccaacacttagtagagatttctgagttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cagattttggaagtctggataaagccaagtccaacacttagtagagatttctgagttgtt 730

                                                                       
Query: 121 ttcaggagaaaagaattctataatagaatgaagtgtgaataacattggccagaggaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttcaggagaaaagaattctataatagaatgaagtgtgaataacattggccagaggaagag 670

                                                                       
Query: 181 atggggaggctaaagatgagttccagaatggatcctatagacattcagaatcctgacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atggggaggctaaagatgagttccagaatggatcctatagacattcagaatcctgacact 610

                                                                       
Query: 241 acagtgaagttttcaggggatttgacacctccttaggtttgaggatagcatattccacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acagtgaagttttcaggggatttgacacctccttaggtttgaggatagcatattccacaa 550

                                                                       
Query: 301 atgagaatattgctttgacctatgtaatgtgtgaatggacagtaactgccagtattgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atgagaatattgctttgacctatgtaatgtgtgaatggacagtaactgccagtattgaat 490

                                                                       
Query: 361 aatagggctcagagcaggtcagggctgtgttgcatgtacaatagccatattgcttggtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aatagggctcagagcaggtcagggctgtgttgcatgtacaatagccatattgcttggtcc 430

                                                                       
Query: 421 atatgattgaatagacccagtggatttcatgctctctgtgtagaaaaaagatacagtggg 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 atatgattgaatagacccagtgggtttcatgctctctgtgtagaaaaaagatacagtggg 370

                                                                       
Query: 481 caaaattggagcgttagtaggttctacagagagaatcagctctcacaatgcagccccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaaattggagcgttagtaggttctacagagagaatcagctctcacaatgcagccccttg 310

                                                                       
Query: 541 ggattctgggataaagccatgctaaccactgcgagaagaaccagtaatgggcatgctatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggattctgggataaagccatgctaaccactgcgagaagaaccagtaatgggcatgctatt 250

                                                            
Query: 601 gagccctggcagagataatcattctggattatgaggagagaattgccca 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagccctggcagagataatcattctggattatgaggagagaattgccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |