| Query= MSMg01no494_d08.g1 MSMg01no494_d08.g1 CHROMAT_FILE:
MSMg01no494_d08.g1 PHD_FILE: MSMg01no494_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:00 2005
(614 letters)
>mm_chr8_104328755_104329768
Length = 1014
Score = 1029 bits (532), Expect = 0.0
Identities = 578/612 (94%), Gaps = 30/612 (4%)
Strand = Plus / Plus
Query: 1 caatgatattgatgttagctcctgtctattacaagatgagggagaagaacacagttgcat 60
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Sbjct: 201 caatgatattgatgttagctcctgtctattacaagatgagggagaagaacacagttgcat 260
Query: 61 ttgagtcagaggaagtacacactaaataattcttacatatgaattcttgtatacttctcc 120
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Sbjct: 261 ttgagtcagacgaagtacacactaaataattcttacatatgaattcttgtatacttctcc 320
Query: 121 ctccatattttcatgttctatgaaatataaggatggtttagaattcatgaagaaaataaa 180
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Sbjct: 321 ctccatattttcatgttctatgaaatataaggatggtttagaattcatgaagaaaataaa 380
Query: 181 tagaacaaacatataactgtttcctatgggttaattaaacagactgcttctccttcacag 240
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Sbjct: 381 tagaacaaacatataactgtttcctatgggttaattaaacagactgcttctccttcacag 440
Query: 241 tcaaggccttcccatactgtgatttaattgtctttctggtattatcttcattactgtctt 300
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Sbjct: 441 tcaaggccttcccatactgtgatttaattgtctttctggtattatcttcattactgtctt 500
Query: 301 acaaacgtgccaagctgcaattttcacttaaaagaacaggaaacatccaactaagcttct 360
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Sbjct: 501 acaaacgtgccaagctgcaattttcacttaaaagaacaggaaacatccaactaagcttct 560
Query: 361 aaatattcaaccatggaatatatatatatatatatatatatatatatatatatatatata 420
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Sbjct: 561 aaatattcaaccatggaatatatatatatatatatatatatatat--------------- 605
Query: 421 tattgacaactttgttattttcacagtcaaattgacattcagtatggaagataaaaaggc 480
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Sbjct: 606 ---tgacaactttgttattttcacagtca------------gtatggaagataaaaagtc 650
Query: 481 ttctgtttatgtataaatgacttggcatgttcatctcattaacaaaagttttatttgcaa 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 651 ttctgtttatgtataaatgacttggcatgttcatctaattaacaaaagttttatttgcaa 710
Query: 541 gtgtttcacattaaagaaaatgatcatcttgggactatttaatgatatctgaacatctga 600
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Sbjct: 711 gtgtttcacattaaagaaaatgatcatcttgggactatttaatgatatctgaacatctga 770
Query: 601 atccatacataa 612
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Sbjct: 771 ttccatacataa 782
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 396 atatatatatatatatatatatatatatt 424
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Sbjct: 605 atatatatatatatatatatatatatatt 577
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 377 aatatatatatatatatatatatatatat 405
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Sbjct: 606 aatatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 394 atatatatatatatatatatatatatat 421
||||||||||||||||||||||||||||
Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 392 atatatatatatatatatatatatatat 419
||||||||||||||||||||||||||||
Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 390 atatatatatatatatatatatatatat 417
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Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 388 atatatatatatatatatatatatatat 415
||||||||||||||||||||||||||||
Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 386 atatatatatatatatatatatatatat 413
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Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 384 atatatatatatatatatatatatatat 411
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Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 382 atatatatatatatatatatatatatat 409
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Sbjct: 605 atatatatatatatatatatatatatat 578
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 380 atatatatatatatatatatatatatat 407
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Sbjct: 605 atatatatatatatatatatatatatat 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 11
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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