Query= MSMg01no494_e01.b1 MSMg01no494_e01.b1 CHROMAT_FILE:
MSMg01no494_e01.b1 PHD_FILE: MSMg01no494_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:03 2005
(589 letters)
>mm_chr8_100968857_100969844
Length = 988
Score = 988 bits (511), Expect = 0.0
Identities = 567/587 (96%), Gaps = 5/587 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaaagtattgtgtaaaacgtctgattgatctgaatggacattatgatatctgc 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaagcagtgtgtaaaacgtctgattgatctgaatggacattatgatatctgc 264
Query: 65 ttttctgccttgcaaataatactggataaataagtactttaattattcactgaatcttag 124
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 265 ttttctgccttgcaaataatacttgataaataagtactttaattattgactgaatattag 324
Query: 125 tggttcagggtctttgatttccaaaacacaccacaattataatgaagctgagtgattttg 184
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 tggttcagggactttgatttccaaaacacatcacaattataatgaagctgagtgattttg 384
Query: 185 ttagttgctttaaacatgacttgcaaggatactcaactattgagaaatatacatcctata 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagttgctttaaacatgacttgcaaggatactcaactattgagaaatatacatcctata 444
Query: 245 taatttgttactccagttctatcattctcagtttctaaaaaactatgacaaagaccactt 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 taatttgttactccagttctatcatactcagtttctaaaaaactatgacaaagaccactt 504
Query: 305 agtttacaggtcaaattcctaaagtagcaaagatatgttgtctttcttttaaataatttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttacaggtcaaattcctaaagtagcaaagatatgttgtctttcttttaaataatttc 564
Query: 365 ttttaaatagtataaatagtacttttaaatttgagactaatataattttaacctaatact 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 ttttaaatagtatatatagtacttttaaatttgagactaatataattttaacccaatact 624
Query: 425 aattctaataattgtagccaaaaa-tgtggttattgaacaaaactaagattttgtttgtt 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 aattctaataattgtagccaaaaaatgtggttattgaacaaaactaagattttgtttgtt 684
Query: 484 tgttttatttacttttt-ctttactctaaatggaaaataagctcttgtcaaccacaacaa 542
||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 685 tgttttatttatttttttctttactctaaatggaaaacaagctcttgtcaaccacaac-- 742
Query: 543 ctcgagattggattgagaaacatgctaaaatcagaatacattagttc 589
|| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 743 -tcaagattggattgagaaacatactaaaatcagaatacattagttc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_e01.g1 MSMg01no494_e01.g1 CHROMAT_FILE:
MSMg01no494_e01.g1 PHD_FILE: MSMg01no494_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:03 2005
(660 letters)
>mm_chr8_101000440_101001499
Length = 1060
Score = 1214 bits (628), Expect = 0.0
Identities = 652/660 (98%)
Strand = Plus / Minus
Query: 1 attagactgaagaaacgaaaatttagttctggagttccagcactacctaccaaggctaag 60
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 860 attagactgaagaaaagaaaatttagttctggagttccagcactacccaccaaggctaag 801
Query: 61 gcaagaggaccaggggtccatggcaaaactcaaccacaaagtttagggacaatctgggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 800 gcaagaggaccaggggtccatggcaaaactcaaccacaaagtttagggacagtctgggtt 741
Query: 121 acatgacactgtatatgagagagggggaaaaattctttcttcccacaccttcttttccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 acatgacactgtatatgagagagggggaaaaattctttcttcccacacctttttttccac 681
Query: 181 tattacacatttagagtaacagggtgaacaaaagccttacaaatgactgaagaagtggag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tattacacatttagaataacagggtgaacaaaagccttacaaatgactgaagaagtggag 621
Query: 241 ttatagcttgtcaatggcataaatttcatataaaaaatcacaactgttcttgttgaaatg 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatagcttgtcaatggcataaaattcatataaaaaatcacaactgttcttgttgaaatg 561
Query: 301 aactactatatccaaaatcaaaacttgtttaagaacagaacctttctacctggtaacgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aactactatatccaaaatcaaaacttgtttaagaacagaacctttctacctggtaacgta 501
Query: 361 catgagctttataaaagaatatcacctagatatataaataatcaaatgctcaaaatataa 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 catgagctttataaaagaatatcacctagatatataaataatcaaatactcaaaatataa 441
Query: 421 aagttagtagcacatttaattaaaattaatgatctggttccctcaaataaaacaagactt 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 aagttagtagcacatttaattaaaattaatgatctggttcccccaaataaaacaagactt 381
Query: 481 tatgaagcaatataaaaggtcaacataatttcattggcaagacatcgtgtgattctagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatgaagcaatataaaaggtcaacataatttcattggcaagacatcgtgtgattctagat 321
Query: 541 gtgaagcactatattataaaccatcatattttcccatgttattctctcaaacagaagtgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgaagcactatattataaaccatcatattttcccatgttattctctcaaacagaagtgc 261
Query: 601 ctcttcaataggaaaacattgtattctggacagtttctaaataatccttaaattaatctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctcttcaataggaaaacattgtattctggacagtttctaaataatccttaaattaatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
