XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTT
AATCCGGAAAAAAAAAAATCTTAGAATTGCAATTTTAAAAAGATTACTAA
GTAAAGCTGCACTTGATTATGACGTAGAATTTTGAGTTGTTACTAACGCA
CAGGCGTGGAATTGTTATGTCAGACTGAATTCACACCGTGAGGTTGAGAG
ACATCAAAGCAGGTTAAGACTAGGACTAGCTTAGAAATCCCGAATTGCAA
TCCTCTTCCTGCTGTCCCCAGCGGGCACATACTTCACATGTGCTTCTTTC
TATAAGCTTCAAGTTGCTAAGTTTTATATTCCATCAATATTGCTATTTTA
ATCTTCTTGAGTAAGAAATGTGTTGGTGTTTTTCTTAAAAACAAACAAAC
AACTAAGTAAGGCCATGTAAAGTGCTTGAAACTGAAACTCAGTGCAGTGA
CTCTTCCTTTCATTATTTGTGTACTGTAAATCAACTTGAAAAGATGGTCC
TGATTCTTTATAAGATATACTATAAAGACAACCTACATGGAAATACACAC
ATACATAGATACACACACAGACATACACACACACACACACACATACACAC
ACACACACACACACACACACACACACACACACCCCTCTGTAGGTTTTTAA
AGATGACATAGGATTACTTTAAAATGTGTTTAAAATAACTCAAAAAAGAC
TGAGTTCTTTTTCTCNAATAAGCATTATTAAAATGAGTATTGTATGAAAC
CCCTGCTGTAAGAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAACCAACCCACTCCCTGCACTGTTCCTTTTTTTTTT
TTTATTTTGGATGTTTTATTTATTTACATTTCAAATGTGATCCCCTTTCT
CGGTTTTCATTCTGGAAACCCTCTATCCCACCCCCTCACCTGCTTCTATG
AGGGTGCTCCCCTACTCACCCACCAACTCATGCTTCTCTGCCCTGGCATT
GCCTACACTGGAGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no494_f08.b1 MSMg01no494_f08.b1 CHROMAT_FILE:
MSMg01no494_f08.b1 PHD_FILE: MSMg01no494_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:09 2005
         (544 letters)



>mm_chr8_52052727_52053668
          Length = 942

 Score =  963 bits (498), Expect = 0.0
 Identities = 529/540 (97%), Gaps = 2/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttaatccggaaaaaaaaaaatcttagaattgcaattttaaaaagattactaa 64
           |||||||||||| | |||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttaaacaggaaaaaaaaa--tcttagaattgcaattttaaaaagattactaa 262

                                                                       
Query: 65  gtaaagctgcacttgattatgacgtagaattttgagttgttactaacgcacaggcgtgga 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 gtaaagctgcacttgattatgacgtagaattttgagttgttactaatgcacaggcgtgga 322

                                                                       
Query: 125 attgttatgtcagactgaattcacaccgtgaggttgagagacatcaaagcaggttaagac 184
           | | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 actctcatgtcagactgaattcacaccgtggggttgagagacatcaaagcaggttaagac 382

                                                                       
Query: 185 taggactagcttagaaatcccgaattgcaatcctcttcctgctgtccccagcgggcacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taggactagcttagaaatcccgaattgcaatcctcttcctgctgtccccagcgggcacat 442

                                                                       
Query: 245 acttcacatgtgcttctttctataagcttcaagttgctaagttttatattccatcaatat 304
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acttcccatctgcttctttctataagcttcaagttgctaagttttatattccatcaatat 502

                                                                       
Query: 305 tgctattttaatcttcttgagtaagaaatgtgttggtgtttttcttaaaaacaaacaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgctattttaatcttcttgagtaagaaatgtgttggtgtttttcttaaaaacaaacaaac 562

                                                                       
Query: 365 aactaagtaaggccatgtaaagtgcttgaaactgaaactcagtgcagtgactcttccttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aactaagtaaggccatgtaaagtgcttgaaactgaaactcagtgcagtgactcttccttt 622

                                                                       
Query: 425 cattatttgtgtactgtaaatcaacttgaaaagatggtcctgattctttataagatatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cattatttgtgtactgtaaatcaacttgaaaagatggtcctgattctttataagatatac 682

                                                                       
Query: 485 tataaagacaacctacatggaaatacacacatacatagatacacacacagacatacacac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tataaagacaacctacatggaaatacacacatacatagatacacacacagacatacacac 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space:   497688
Effective search space used:   497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)