BAC Information

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BAC

Clone NameMSMg01-494M15
Chromosome8 (Build37)
Map Location 111,530,436 - 111,531,043
singlet/doubletsinglet
Overlap genenone
Upstream geneAtbf1
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M15.T7 (MSMg01no494_m15.b1)MSMg01-494M15.TJ (MSMg01no494_m15.g1)
ACCAG571986AG571987
length732736
length of high quality
(start - end)
699 (34 - 732)620 (71 - 690)
definitionCHROMAT_FILE: MSMg01no494_m15.b1 PHD_FILE: MSMg01no494_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:43 2005CHROMAT_FILE: MSMg01no494_m15.g1 PHD_FILE: MSMg01no494_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGTTT
ACTTCTATACCCCATTTTTTTGATTGGGTTGTTTGGTGTTTTGGTGATTA
ACTTCTTGAGTTCTTTATATATTTTGGATATTAGCCCTCTATCAGGTGTG
GGATTAGTGAAGATTTTTTTTCCCAATCTGTAGGTTGCTGATTTGTCTTA
TTGACTATGTCCTTTTTCAGAAGCTTTCCAGTTTCATGAGGTTCCATTTA
TCAATTTTTGATCTTAGAGCCTAAGCCATTGAAGTTCTGTTTAGGAAATT
TCCCCCTGTGCCAATGAGTTCAAGGCTCTTTCCCACTTTCTCTTCTATTA
GATTCAATGTATCTGGTTTTATGTAGAGGTCTTTGATCCACTTGGACTTG
AACCTTGTACAAGGTGACAAATATGGGTCTATTTTCATTCTTCTACATAC
AGACATCCAGTTAGACCAGCACTATTTATTGAAGATTCTTTCTTTCTTTT
TTCCATTGTATATTTTTGTCATCTGTGTTAAAGATCAAGTGACCGTAAGT
GTGTGGTTTTATTTCTGGGTCTTCAATTTTATTCCATTGATCAATGTGTC
TATCTCTGTACCAATACCATGTAGTTTTTATCACTACTGCTCTGTAGTAA
AGCTTGAGGTCAAAGATGGTGATTCCCCAAGTTGTTCTTTTTTTGTTAAG
AATTGTTTTCGCTATTCTGGTTTTTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGCTTAGCCACAGTGGAGTAGAGGGAAATGT
TTTTAGACAAGAAAAGAGCTTCATGTTTGACATGTGTAACACAGTAAGTG
CATGTGGAATCTGAGGGACGCTGAGGTGCCAGGGTGGACGTTAGGTTCAA
GCTGTCACTAGTTCAAGTGGTGGTGCTGTCTTTCCACTGCAATGGTGCTA
CTAAGGGATACCTTTGAAGATATTTTAATTCCTAAACTACTTCATGCTAA
TATATCTTTTTAAGGAAGTGTTTGAGCGTAATGATTTGTCACTTGTTTTG
AGTAAAGGGAATTCCTCCTCTGAGTTTCAAAAGAAAAGTCTGGGCTGCAC
TTGTTTCTCCGCACCGCTGTGCAGAGAAGTAGTTTAGAAGTCTATGCCTC
ATAGATGTCTGTGCCAAACCACCATCTAATACTGATGAGTTTATAGGGAG
CACCTGCTATTACGAGACCAGGAACTAGAACCTGGCATCGGAGGATCGTG
GTAGAAGCAAGGTGCACGCCAGCAGGTCATATTTACAGTTACAATATTTG
GGGCTACCGCAGCCAGAGAATCACGGGGCGAGAAAGGAAGGGCAGTGCTG
CCTTTTTCCTTTGTCTGGAAAAACAAGCACGTGCGCGCTCCAAGTGAAAA
CAAGGGAGCCCCTGACCTTTGCCTTACATACAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m15.g1 MSMg01no494_m15.g1 CHROMAT_FILE:
MSMg01no494_m15.g1 PHD_FILE: MSMg01no494_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:43 2005
         (620 letters)



>mm_chr8_111530236_111531254
          Length = 1019

 Score = 1081 bits (559), Expect = 0.0
 Identities = 596/613 (97%), Gaps = 9/613 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttagccacagtggagtagagggaaatgtttttagacaagaaaagagcttcatgtttga 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttagccacagtggagtagagagaaatgtttttagacaagaaaagagcttcatgtttga 260

                                                                       
Query: 61  catgtgtaacacagtaagtgcatgtggaatctgagggacgctgaggtgccagggtggacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgtaacacagtaagtgcatgtggaatctgagggacgctgaggtgccagggtggacg 320

                                                                       
Query: 121 ttaggttcaagctgtcactagttcaagtggtggtgctgtctttccactgcaatggtgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggttcaagctgtcactagttcaagtggtggtgctgtctttccactgcaatggtgcta 380

                                                                       
Query: 181 ctaagggatacctttgaagatattttaattcctaaactacttcatgctaatatatctttt 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 381 ctaagagatacctttgaagatattttaattcctaaactacttcatgctaatatatc---- 436

                                                                       
Query: 241 t----aaggaagtgtttgagcgtaatgatttgtcacttgttttgagtaaagggaattcct 296
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 -ccaaaaggaagtgtttgagcgtaatgatttgtcacttgttttgagtaaagggaattcct 495

                                                                       
Query: 297 cctctgagtttcaaaagaaaagtctgggctgcacttgtttctccgcaccgctgtgcagag 356
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 496 cctctgcgtttcaaaagaaaagtctgggctgcacttgtttctccgcaccgctgcgcagag 555

                                                                       
Query: 357 aagtagtttagaagtctatgcctcatagatgtctgtgccaaaccaccatctaatactgat 416
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 556 aagtagtttagaagtctatgcttcgtagatgtctgtgccaaaccaccatctaatactgat 615

                                                                       
Query: 417 gagtttatagggagcacctgctattacgagaccaggaactagaacctggcatcggaggat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gagtttatagggagcacctgctattacgagaccaggaactagaacctggcatcggaggat 675

                                                                       
Query: 477 cgtggtagaagcaaggtgcacgccagcaggtcatatttacagttacaatatttggggcta 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cgtggtagaagcaaggtgcacgccagcaggtcatatttacagttacaatatttggggcta 735

                                                                       
Query: 537 ccgcagccagagaatcacggggcgagaaaggaagggcagtgctgcctttttcctttgtct 596
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccgcagccagaaaatcacggggcaagaaaggaagggcagtgctgcctttttcctttgtct 795

                        
Query: 597 ggaaaaacaagca 609
           |||||||||||||
Sbjct: 796 ggaaaaacaagca 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space:   615490
Effective search space used:   615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)