BAC Information

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BAC

Clone NameMSMg01-495J16
Chromosome8 (Build37)
Map Location 95,366,794 - 95,367,169
singlet/doubletsinglet
Overlap geneMmp2
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325
Downstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495J16.T7 (MSMg01no495_j16.b1)MSMg01-495J16.TJ (MSMg01no495_j16.g1)
ACCAG572609AG572610
length757790
length of high quality
(start - end)
244 (71 - 314)368 (78 - 445)
definitionCHROMAT_FILE: MSMg01no495_j16.b1 PHD_FILE: MSMg01no495_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:42 2005CHROMAT_FILE: MSMg01no495_j16.g1 PHD_FILE: MSMg01no495_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXAANATCCAAACCGAGCGCGNGAATCTA
TGGCATTCATAAACAAGAGTGTTATGTTAGATCTTACCAATCATCGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGCTAAAA
GGATGGCTTAGAGATTAAGAGCACTTGCAACAGCTGCAAGGGACTGGAGT
TTGGTTCCTAGGGTCAATGTTGGCTCACCACCACCTGCAACTCCATCTCT
GGGTCATCCAGTGCCTCTCTGGCCTCTGTGGGCACACACACTTACATGCA
CATGCCCCACACATTTATATGCATGTAATTAAAGTCAAAATAAATCTTAA
AAAATATGTGTTAGTGAATTTCATGGTTCAATTTGGATCCCATCCCTATG
GAACTTTTATACACCCACACACACACTCACACAATCATATCACCCCTCTC
TCCACACATACATATTCTTTTCCTTTCTCCCCAACTTCCCTCCCCCACCC
TCTCACTCCCCCTTTTCCTTCCCTTTCATAATTTTCCGAAAGGGCCCCCC
CCTTTCCCCCCCCTACCCGGGGGGCCCCTCGACAAAAACCCCCCCTGGAA
CCCTTGGGGGGCATCGCTCTACGTCTCCCCCCTAAAGCCTCCCAAAAAAA
GAAAACCATCGGGTTTTTCTTTGTTTTTTAAATACCCCCCGCCTCGGTTT
TTTTTTCCCCCCCCCAATGCTATTTCTCTCTTTTTCGCGCAGCACCCCCG
TGGTGGG
CCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXCGGTGCACACCTCGGGT
GACACTATAGAATGTCCCGCGAACAGCTGCTCTGCAGATGTCAGGTTCAC
ATTTCTATAGCAAGCCCATGTGCTGCTGGGGCTGCTGGGGCTGCTGGGGC
TGCTGGGGCTGCTGGGGCTGCTGGGGCTGCTGGGGCTGCTGGGGCTGCTG
GGGCTGCTGATTGCAATTTGAGATCAGAGGCTTACTCATGACCAACCAAT
ACTCAAGGCCACGTGCAGCTGAGGATAGCTTTTGTCTTTGTAACTCAATG
GCAAGTCCTGTTACAATGTTTATTAGGTTGCCTTCACCTGGGACCAATTC
CTAGGATGAGGATGAGCTCATGGGCAACAGGGGCTCCCTGTGCTGAAGGA
TAATTATACCTATGGAGCTGACAGGAAGGGGTTGGGGGGAGGGAGGGAGC
NCCCCCCCCCTCTCCCCTTCTTCTCTCTTTTCCCTCCCTCCTCCCCTCCT
CTCCCCCCCCCCCTTCCCTTCTCCTTCTCCTTCCTCTTTCCCTTCTTGTT
CTCGGTTTTTCCCCCCTTTCTTTTTTCTTTCCCCGCGCGCCCTTTCCCCT
CTCTTCTCGCCCCCCCCTCTCCTCTCTTTTCCCGCTTTTTCCCCTTTTCT
CCTTCCGTCCTTTTTTTTCTTTATTTCTCCCCGCTATTTTCCACCCGCCC
GCTAATTTCATCCCCTCCTCCGCACTCTCCTCGCCACTATATTAATCTCA
CTTATCCTATTTTTCTCTCACTCTCCCCCCCCGTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_j16.g1 MSMg01no495_j16.g1 CHROMAT_FILE:
MSMg01no495_j16.g1 PHD_FILE: MSMg01no495_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:42 2005
         (368 letters)



>mm_chr8_95366603_95367369
          Length = 767

 Score =  659 bits (341), Expect = 0.0
 Identities = 364/377 (96%), Gaps = 10/377 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctctgcagatgtcaggttcacatttctatagcaagcccatgtgctgctggggctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgctctgcagatgtcaggttcacatttctatagcaagcccatgtgctgctggggctgctg 251

                                                                       
Query: 61  gggctgctggggctgctggggctgctggggctgctggggctgctggggctgctggggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gggctgctggggctgctggggctgctggggctgctggggctgctggggctgctggggctg 311

                                                                       
Query: 121 ctggggctgctg---------attgcaatttgagatcagaggcttactcatgaccaacca 171
           ||||||||||||         |||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctggggctgctggggctgctgattgcaatttgagatcagaggcttactcatgaccaacca 371

                                                                       
Query: 172 atactcaaggccacgtgcagctgaggatagcttttgtctttgtaactcaatggcaagtcc 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atactcaaggccacgtgcagctgaggatagcttttgtctttgtaactcaatggcaagtcc 431

                                                                       
Query: 232 tgttacaatgtttattaggttgccttcacctgggaccaattcctaggatgaggatgagct 291
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgttacaatgttgag-aggttgccttcacctgggaccaattcctaggatgaggatgagct 490

                                                                       
Query: 292 catgggcaacaggggctccctgtgctgaaggataattatacctatggagctgacaggaag 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 491 catgggcaacaggggctccctgtgctgaaggataattatacctatggagctgagaggaag 550

                            
Query: 352 gggttggggggagggag 368
           |||||||||||||||||
Sbjct: 551 gggttggggggagggag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)