BAC Information

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BAC

Clone NameMSMg01-495M24
Chromosome8 (Build37)
Map Location 112,763,695 - 112,763,979
singlet/doubletsinglet
Overlap genenone
Upstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495M24.T7 (MSMg01no495_m24.b1)MSMg01-495M24.TJ (MSMg01no495_m24.g1)
ACCAG572767AG572768
length746751
length of high quality
(start - end)
289 (52 - 340)544 (76 - 619)
definitionCHROMAT_FILE: MSMg01no495_m24.b1 PHD_FILE: MSMg01no495_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:57 2005CHROMAT_FILE: MSMg01no495_m24.g1 PHD_FILE: MSMg01no495_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCATATCCAATTCCATGAATATAGTTCATAGAAGAAAA
GAAAGTAACTGCTTGGTTCTGAACTTTCAATTTTTTTTGAATAATTCATG
GGTACCGGAGAAACGCCCAAGGATAATTTTTAAGTATTACTATGAACACA
GATATGTTCATGTTTGATGTGCTTCAATTTCTGTAACTATTCTGACTCCC
AAATTGTTTCTCTATCCATCTGCCAAAACTCCATTAGGCAACATCTCTTC
TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTACATACTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTGTCTCCCCTCCCCTCCCCT
CCCCTCNCCTTCCTTCCCCCCCTCCCTTCTCCTTCCTTTTCCCTCCACCC
TCCTCCTTTCTCCTTCTCTTTCCTTCTTTCCTCCCTCCCCCCTTTNTTCC
CNTTTTTATAACTTTCCCTTTTTCCCCCACCAATTNACTCATTTTCAAAA
AAATCCATTTTTCCCTTCCCTTTTTATTTCCTACTCCTCTACCTTACATA
CCCACTATTCCCCCCCATAATCCCTTTATATTTCCCCCCCCCCCCATAAA
TTTTATTTCTCACTCTCTCCACCCTCATCTTCCTTTTTCCCAACCCACAT
CCTTTATCTTTTTCCCCCCACCATTCTTCTACTTTTCTTCACCCCA
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAATCCTCCTGTCTTGGCTTCCTG
AGTGTTGAGCAGATATGTTCCACTCTGCATGCCCAGCAATAAATTTGTCT
TTGGTGTCATCTTTAGAGAGAAACAGAGACTATCTGCTACTCTGATAAGG
TTCTGCATAGGTCAAAATACTGTTTCAAGGTGAAAAAAATTAACATGAAT
AATTTACCTTACTTATTGAGTCCAAAAGCAAAAGTTAATGGTTACTGGGA
TTTAAGTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCCCCCTCTCTACTTCAGAGAAACAGACAAATGACA
CCTGACTGTCAATGAAGCTAGTTGATTAGCCAATGACTGAGGAGGGGGGA
GAAAAGGACTGGGCATTCTCCCAGCCAGGGGAGGAGGAGAGAGAGGAACT
GAGGATTAACCATATGGAGAGAGTTCCAGAGACACCAGGAGTAAAATATA
TGGATTAGAGAAAGCCAGATAAGTACTAAAATGCACATTTCTCGGGGATC
TGGGCTAGGAGGGACACGGATTAGTTTAGAGGATTAAAATAGAGCAATAC
TGCTCAGTTGTTGTACCCTTGAAGCTTGATAAATATATATATAACAATCC
AGTCTCAATTATTTGGGAGCTAGCTGGGTTAAGAAGAAAACAAAAAATAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_m24.b1 MSMg01no495_m24.b1 CHROMAT_FILE:
MSMg01no495_m24.b1 PHD_FILE: MSMg01no495_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:57 2005
         (289 letters)



>mm_chr8_112763534_112764223
          Length = 690

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%), Gaps = 1/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcatatccaattccatgaatatagttcatagaagaaaagaaagtaactgcttg 64
           ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 gaattcctcataggcaattccatgaatatggttcatagaagaaaagaaagtaactgcttg 387

                                                                       
Query: 65  gttctgaactttcaa-ttttttttgaataattcatgggtaccggagaaacgcccaaggat 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttctgaactttcaatttttttttgaataattcatgggtaccggagaaacgcccaaggat 327

                                                                       
Query: 124 aatttttaagtattactatgaacacagatatgttcatgtttgatgtgcttcaatttctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatttttaagtattactatgaacacagatatgttcatgtttgatgtgcttcaatttctgt 267

                                                                       
Query: 184 aactattctgactcccaaattgtttctctatccatctgccaaaactccattaggcaacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aactattctgactcccaaattgtttctctatccatctgccaaaactccattaggcaacat 207

                                                        
Query: 244 ctcttctttccttccttccttccttccttccttccttccttcctt 288
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctcttctttccttccttccttccttccttccttccttccttcctt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)