BAC Information

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BAC

Clone NameMSMg01-496O19
Chromosome8 (Build37)
Map Location 108,895,866 - 108,896,349
singlet/doubletsinglet
Overlap genenone
Upstream genePlekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496O19.T7 (MSMg01no496_o19.b1)MSMg01-496O19.TJ (MSMg01no496_o19.g1)
ACCAG573615AG573616
length822746
length of high quality
(start - end)		---664 (81 - 744)
definitionCHROMAT_FILE: MSMg01no496_o19.b1 PHD_FILE: MSMg01no496_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:25 2005CHROMAT_FILE: MSMg01no496_o19.g1 PHD_FILE: MSMg01no496_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATTTTTGGCGCCCAACNACTCGCTTTCGTTAGTCGACCGCNGGAATCC
GGGATTCCCACAGCAGGTAGAGAGACCCTACCNCAAAACACTACANCAAA
GGAAACAGTTTCCACAANCNNCGCNTCGAGNNNNCAACNNNNNCNTNNCC
NCCTTCCTTTTTTTTTTTTTTTTTGNTTTTTCAAAACAGGGNTTTCCCCC
GGGAAACCCCGGGTTTTCCCGGGAAACCCCCCTTTAAAACCAAACCGGGT
TTCTTAAACAAAAAACCCCCCCCGCCCCCCCCCCCCCGGGGGGGGGAAAA
AAAAGGANNGGGCCCCCTTTTTTTCTTTTGGGAAAGGAGAACAAAAAAAA
AAACCCCCACAAATTTTTCCCCCNNNGGGCCCCCGGGGACCCCCGGGGAA
TTTTTTTGGGGGTTTTGCCCCCCCCCAAAAAACCCCCCCCCCCCCCAAAA
AAAAAAAAAAAACTCCCCCCTATTTATTAAAACCCCCCTCCCCCNNNACC
CCCGGGTTTTTTTAAAAGGGGCACCCCCCTTCTTTTTNAAAAAAAAAAAA
ANAGAACACCCCCCACCNNNCGGGGGGGGCCCCCCCCCAAAAAACATTTT
AAAGAAAAAAANNNNNCNNCCCCCCCCCCCCCCCCCCCCCCAATTTTTTT
TTTAAACCCCCCCCATTTCCCCCGCTCCTNTTTTANANAAAAAAAAAAAA
AAAAACACCCCCCCCCCCCCCCCCCCCAANNCTCTTTNNNAAAAAAAAAA
AAAAAATGGCACCCACCGCCNCCCTCCNNNAAAANCNCGGAAAAAAAAAA
AAAACCCTGGGGTTTTGGGTTG

NNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGAGTTCTAGATTTTA
GAGTATGACACGGGAATGTTCGCATTCTTGGTGCCAGAATGAGAGCTGAA
ATTGGCACTCACCTAATTCTCCTCCCTTTGTTCCTGTGGGGAGTTTCTTT
GAGACAGCTCATGCTAAAAGCTTTTGGTAATGGTTTCCCGTGAAGACACA
CCAATTCCCCACTGGATAATTAGGATGTAGCAGAATCCTCTGAGAATGGT
TGTACTCTCCAAAGGCTGTTTTTGCCACGGCCCAGGGACTGGGGCTTCTT
AATTGGTTTGGGAAAGAGGGCAATATATATATATATATATATATATATTG
TATATGTGTATATACATGCATATGTGTATATATATGCATATATGTATATG
TGTGTATGCATATATATAGTGCTGAAAGATATATATGTGTGTGTATATGT
GTGTGTATATATATATATATACACATCTTGGATGACTTGTTTAAATCATT
GTTTTATCCACAGATATAAGTAAAGTGTTGAAAGTGCTATGTTTGATTAA
AAAGTGACTTTGCCTTAGGATGAATGCTATAACAATGTAGCATAATGTAT
TCCCCTATGTCTGTGCCACTTAGTGCCTGAACTTGATGTTTTGCGCCCTG
ACCCTTGCCCTACAGGACTCTGAAACCTGGAAGGGCCACTCTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_o19.g1 MSMg01no496_o19.g1 CHROMAT_FILE:
MSMg01no496_o19.g1 PHD_FILE: MSMg01no496_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:25 2005
         (664 letters)



>mm_chr8_108895850_108896913
          Length = 1064

 Score =  642 bits (332), Expect = 0.0
 Identities = 427/488 (87%), Gaps = 51/488 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggagttctagattttagagtatgacacgggaatgttcgcattcttggtgccagaat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 cagaggagttctagattttagagtatgacacgggaatgttcgccttcttggtgccagaat 441

                                                                       
Query: 61  gagagctgaaattggcactcacctaattctcctccctttgttcctgtggggagtttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagagctgaaattggcactcacctaattctcctccctttgttcctgtggggagtttcttt 381

                                                                       
Query: 121 gagacagctcatgctaaaagcttttggtaatggtttcccgtgaagacacaccaattcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagacagctcatgctaaaagcttttggtaatggtttcccgtgaagacacaccaattcccc 321

                                                                       
Query: 181 actggataattaggatgtagcagaatcctctgagaatggttgtactctccaaaggctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 actggataattaggatgtagcagaatcctctgagaatggttgtactctccaaaggctgtc 261

                                                                       
Query: 241 tttgccacggcccagggactggggcttcttaattggtttgggaaagagggcaatatatat 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctgccacggcccagggactggggcttcttaattggtttgggaaagagggcaatatatat 201

                                                                       
Query: 301 a--------------------------------------tata--tatatatatatat-t 319
           |                                      ||||  ||||||||||||| |
Sbjct: 200 atatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatgtatatatatatatat 141

                                                                       
Query: 320 gtatatgtgtatatacatgcatatgtgtatatatatgcatatatgtata--tgtgtgtat 377
            ||||| | |||||| ||  |||| | ||||||||||  ||||||||||  |||||||||
Sbjct: 140 atatatatatatatatat--atatatatatatatatg--tatatgtatatgtgtgtgtat 85

                                                                       
Query: 378 gcatatatatagtgctgaaagatatatatgtgtgtgtata----tgtgtgtgtatatata 433
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 84  gcatatatatagtgctgaaagatatatatgtgtgtgtatatgtgtgtgtgtgtatatata 25

                   
Query: 434 tatatata 441
           ||||||||
Sbjct: 24  tatatata 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 162
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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