BAC Information

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BAC

Clone NameMSMg01-498A20
Chromosome8 (Build37)
Map Location 101,340,082 - 101,340,690
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498A20.T7 (MSMg01no498_a20.b1)MSMg01-498A20.TJ (MSMg01no498_a20.g1)
ACCAG574471AG574472
length824765
length of high quality
(start - end)
---609 (56 - 664)
definitionCHROMAT_FILE: MSMg01no498_a20.b1 PHD_FILE: MSMg01no498_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:56 2005CHROMAT_FILE: MSMg01no498_a20.g1 PHD_FILE: MSMg01no498_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCCTCTCCCTTTCTCCCTTTTTTCGTCTCTTTTTTTTTTTTACCCCT
CTTTTCTTTTTCCCGCTCTTCTCTCTTCTTTCTCTCTTTCTCTCTTCTCT
CCGCTTCCTTTGTTTTCTCTCCTCCCTCCCCCTTGTCCTTTNCTNNNCTC
TCTTCGTCTCTTCCTCTTCTCCCCCTCTAATAAAATTTTTTGGGCCGGGG
CCCGGCCCTTAAATACCGNNAACCTTCACCTTNATTATTTCCTCAAANNA
GGNATCCCCGNCGGGGAAAAANTTCCNTGGTTGGNAAGTTATTCTCCCCG
CGGNNCNTAAAAAAAAAAGCCCAAAAGCCCTTTTTTAGNTTGGGAGGAAT
TAAGNAAAATTTTAACCCCCAAATTTCCAANACCCTTAAAATTTTAAAAA
CCCAAAATTTTTAAAAGGGGTTTTTGGCCCCTTCCCCCCCCCAACCCCCC
AAGGGAAAAGGGGCCCCCATTTTTGGGGGTTAAAAAAAATTGGGGGACCC
CTTCCCCCTTTTTGGAAGAAAAAAAAAAAACCCTCTTTTTTTCCCCCCAC
CCCAAAATTGGTGGGGGGTGTGGAAAAAAAAAAAGAAAAAATTTGTTGGG
GTGTGGGGCCCACCTATTTTTTTTTATAAAAAAAAACTTTCTCCAAACAA
TTTTTTTTTTTCTCTTTCCCTTCCTTCTCTTTTTCCCTCCTTTTNCCCTC
TCTTTCTTTCGTATTATCTTCTNTTGAGGGCCCGGCCCTCTCCTCCCACC
CTCCTCCTGTTCGTTCCTTCTCCCTCTTGCTTCTCCTTTTTCTTCCCCCC
CTCGTTCTCTTCTCTTTTTTCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTTATTGATTGACATTATCAAGCAGGTAGACAGACACTGTAGCA
GGTAAAATTGCTTTTTTTGTGTTGTTGCCTGCCAAACTTTAACAGAGAAA
GTGATGTGCTTTTGCCAGGGAGGGCTACTATACAATCAGGTAATGGGTCT
TAAGAATGCTGCAAACATTAATGGTGTTTGATCAATAATATTACTACCAC
AGGTAAAATGCTACTCCATTTATTATTAAGATATTGCTGAAAATGGAGTG
ACTCAAAGGACTTCTAGAAAGTATGAATAATTGCTATATCATTAGTCCAA
TGAAATGTTAATGGAAGTTTTGTCATATAACATGCTGTGAGTATTTTTTT
CTGAAAGATTTTAGAGTTCCTCTGAGCTAATGCCTGACACAGACCCACAA
TTACCCTATCAAAGTCTAATCTTCCTCCTATCCATGAGCTAGTCCAGATA
GACAAAGATGTCATTAATTCTTTATTGCTATATTTAATTTTTTTCAAACT
ATATCATGAAATATAAGCCGAGTGTAACAATGCATTTTTTACTGAATATT
CTTTTTTTCCTGAATATTTAAAAATATAGTGATTAAATAACAGAGGTCTT
GATTATTTTTCCATAAGCAGCTGATATTGTTACCTCTCCAGAACATTACA
ATTCANTGAAATANTTTTTTTCACCAAACACATCCACATGTATATCTTTA
AATGAGNATAGTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_a20.g1 MSMg01no498_a20.g1 CHROMAT_FILE:
MSMg01no498_a20.g1 PHD_FILE: MSMg01no498_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:57 2005
         (609 letters)



>mm_chr8_101339882_101340890
          Length = 1009

 Score = 1170 bits (605), Expect = 0.0
 Identities = 608/609 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttattgattgacattatcaagcaggtagacagacactgtagcaggtaaaattgctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 acttattgattgacattatcaagcaggtagacagacactgtagcaggtaaaattgctttt 750

                                                                       
Query: 61  tttgtgttgttgcctgccaaactttaacagagaaagtgatgtgcttttgccagggagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tttgtgttgttgcctgccaaactttaacagagaaagtgatgtgcttttgccagggagggc 690

                                                                       
Query: 121 tactatacaatcaggtaatgggtcttaagaatgctgcaaacattaatggtgtttgatcaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 689 tactatacaatcaggtaatgggtcttaaaaatgctgcaaacattaatggtgtttgatcaa 630

                                                                       
Query: 181 taatattactaccacaggtaaaatgctactccatttattattaagatattgctgaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taatattactaccacaggtaaaatgctactccatttattattaagatattgctgaaaatg 570

                                                                       
Query: 241 gagtgactcaaaggacttctagaaagtatgaataattgctatatcattagtccaatgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gagtgactcaaaggacttctagaaagtatgaataattgctatatcattagtccaatgaaa 510

                                                                       
Query: 301 tgttaatggaagttttgtcatataacatgctgtgagtatttttttctgaaagattttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgttaatggaagttttgtcatataacatgctgtgagtatttttttctgaaagattttaga 450

                                                                       
Query: 361 gttcctctgagctaatgcctgacacagacccacaattaccctatcaaagtctaatcttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gttcctctgagctaatgcctgacacagacccacaattaccctatcaaagtctaatcttcc 390

                                                                       
Query: 421 tcctatccatgagctagtccagatagacaaagatgtcattaattctttattgctatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcctatccatgagctagtccagatagacaaagatgtcattaattctttattgctatattt 330

                                                                       
Query: 481 aatttttttcaaactatatcatgaaatataagccgagtgtaacaatgcattttttactga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatttttttcaaactatatcatgaaatataagccgagtgtaacaatgcattttttactga 270

                                                                       
Query: 541 atattctttttttcctgaatatttaaaaatatagtgattaaataacagaggtcttgatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atattctttttttcctgaatatttaaaaatatagtgattaaataacagaggtcttgatta 210

                    
Query: 601 tttttccat 609
           |||||||||
Sbjct: 209 tttttccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)