BAC Information

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BAC

Clone NameMSMg01-498B19
Chromosome8 (Build37)
Map Location 4,165,586 - 4,166,224
singlet/doubletsinglet
Overlap genenone
Upstream geneInsr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g
Downstream geneB130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498B19.T7 (MSMg01no498_b19.b1)MSMg01-498B19.TJ (MSMg01no498_b19.g1)
ACCAG574516AG574517
length743750
length of high quality
(start - end)
628 (72 - 699)598 (60 - 657)
definitionCHROMAT_FILE: MSMg01no498_b19.b1 PHD_FILE: MSMg01no498_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:01 2005CHROMAT_FILE: MSMg01no498_b19.g1 PHD_FILE: MSMg01no498_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACCCAATTACGAGAGGTTCTGAGCCGTCCATTACTATCTGC
TCTTCAAACCTCGTCCCTGGTAACTGTTGAGATGGGAGGGGTGTGCTGTG
AAAGAGATCGACTTCTAAGCAGTCAGCGACACTGATGGAAGGCGGGCTCT
TGTATTTGACCAATGGAGTCGTGAGACTGGGAATGAGGTTGGCGTCCTGG
GCGGTAGGACTTAAGGCCATGGGCTGAATGAAATGGAGGAGTTAATGAGG
AGGCGTGTCTCGGTGCAAGGATATGTTGGACCAGACAAGGGCCCGGCTCC
TGGCTTGGGTTTTAGATCGGGCGTATGCAGAAGGCCTCTCTTCAGAGCCA
GCCAGCATCTCTGTGGTGGCCGGGTGGTTAGGTCAGGTCCTACCCTTGCT
GGGTGAATCTGGCATCAAAACGCCGATTGCATCCTTCACTTGCCCCAACC
ATTATCTCTCCTGGGACGGGGCGGGGCGGGGCGGGGATGGGGTATAGAGC
GGCGGAGGGGGTGTCAGGTCTCCTTTGGGTCCAGAGCTTGAAGAATGAAT
GAATGAATGGGACCGTGGTTCTTTTGCCGACTCCCCCTTGTCCTCGTTTT
TTTCCTCCTCCCCTTTCTCCTTCCACTTTGTTTTTATTTTTTTTTTATTT
TAATTTTTGAGACAGAGTCTCTTGTAGACTTANGATGACCTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCATCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGTAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAATATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTG
GACATATATCCAGAAGATGCCCCAACCGGTAAGAAAGACACATGCTCCAC
TATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGAAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGGATTTATGAAATTCCTAGG
CAAATGGATGGACTTGGAGGGCATCATCCTGAGTGAGGTAACACAATCAC
AAAGGAATTCACACAATATATACTCACTGATAAGTGGATATTAGCCCAGA
AACTTATGATACCCAAAATATAAGATACAATTTCCTAAACGCATGANACA
CAAGAAGAACGAAGACTAAAGTGTGGACACTTTGCCCCTTCCTAGAATTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_b19.b1 MSMg01no498_b19.b1 CHROMAT_FILE:
MSMg01no498_b19.b1 PHD_FILE: MSMg01no498_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:01 2005
         (628 letters)



>mm_chr8_4165586_4166611
          Length = 1026

 Score = 1058 bits (547), Expect = 0.0
 Identities = 604/643 (93%), Gaps = 33/643 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggttctgagccgtccattactatctgctcttcaaacctcgtccctggtaactgttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaggttctgagccgtccattactatctgctcttcaaacctcgtccctggtaactgttgag 580

                                                                       
Query: 61  atgggaggggtgtgctgtgaaagagatc--gacttctaagcagtcagcgacactgatgga 118
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 579 atgggaggggtgtgctgtgaaagagatcctgacttctaagcagtcagcgacactgatgga 520

                                                                       
Query: 119 aggcgggctcttgtatttgaccaatggagtcgtgagactgggaatgaggttggcgtcctg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aggcgggctcttgtatttgaccaatggagtcgtgagactgggaatgaggttggcgtcctg 460

                                                                       
Query: 179 ggcggtaggacttaaggccatgggctgaatgaaatggaggagttaatgaggaggcgtgtc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggcggtaggacttaaggccatgggctgaatgaaatggaggagttaatgaggaggcgtgtc 400

                                                                       
Query: 239 tcggtgcaaggatatgttggaccagacaagggcccggctcctggcttgggttttagatcg 298
           |||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 399 tcggtgcaaggataggcgggaccagacaagggccgggctcctggcttgggttttagatcg 340

                                                                       
Query: 299 ggcgtatgcagaaggcctctcttcagagccagccagcatctctgtggtggccgggtggtt 358
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 339 ggcgtatgcagaaggcctctcttcag----agccagcatctctgtggtggccgggtggtt 284

                                                                       
Query: 359 aggtcaggtcctacccttgctgggtgaatctggcatcaaaacgccgattgcatccttcac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 283 aggtcaggtcctacccttgctgggtgaatctggcatcaaaacgccgattgcatccttcat 224

                                                                       
Query: 419 ttgccccaaccattatctctcctgggacggggcggggcggggcggggatggggtatagag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttgccccaaccattatctctcctgggacggggcggggcggggcggggatggggtatagag 164

                                                                       
Query: 479 cggcggagggggtgtcaggtctcctttgggtccaga------------------------ 514
           ||||||||||||||||||||||||||||||||||||                        
Sbjct: 163 cggcggagggggtgtcaggtctcctttgggtccagagccgcacacgtgagagctgcttta 104

                                                                       
Query: 515 ---gcttgaagaatgaatgaatgaatgggaccgtggttcttttgccgactcccccttgtc 571
              ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 103 aaggcttgaagaatgaatgaatgaatgggaccttggttcttttgccgactcccccttgtc 44

                                                      
Query: 572 ctcgtttttttcctcctcccctttctccttccactttgttttt 614
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  ctcgtttttttcctcctcccctttctccttccactttgttttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1026
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1016
Effective search space:   627888
Effective search space used:   627888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)