Query= MSMg01no498_e16.b1 MSMg01no498_e16.b1 CHROMAT_FILE:
MSMg01no498_e16.b1 PHD_FILE: MSMg01no498_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:15 2005
(679 letters)
>mm_chr8_59706356_59707434
Length = 1079
Score = 1274 bits (659), Expect = 0.0
Identities = 674/679 (99%)
Strand = Plus / Plus
Query: 1 tgtgcagatgctcccatggaagcaggcagtcacacatcaaagaccagttaggtgtacttg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcagatgcttccatggaagcaggcagtcacacatcaaagaccagttaggtgtacttg 260
Query: 61 gtcttcttccagaggaccaaggttctgtttctggcacttacatcaggtgcttcacaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttcttccagaggaccaaggttctgtttctggcacttacatcaggtgcttcacaatct 320
Query: 121 gcacctccagtcacctctggtttctgtgggctcctgcatccacatactgcacataaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacctccagtcacctctggtttctgtgggctcctgcatccacatactgcacataaactc 380
Query: 181 atgcaggcatgcacatacacataagttagaacttttaattaaaaaagtagagtcttcaca 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 atgcaggcatgcacatacacataagttagaacttttaatttaaaaagtagagtcttcaca 440
Query: 241 attcaatcacctatttatactactacaatggaggcatacaggtatttgaataatattcca 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaatcacctacaaatactactacaatggaggcatacaggtatttgaataatattcca 500
Query: 301 gagacacaccataaatagaagcaacacattttaaaaatctaaagatactttggaatatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacacaccataaatagaagcaacacattttaaaaatctaaagatactttggaatatcc 560
Query: 361 aaaccaatgagtaattataaagtacttcattagataaggaagatataaaattatattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccaatgagtaattataaagtacttcattagataaggaagatataaaattatattttt 620
Query: 421 aaatttcactcattagaaatatactattaacaaaaaaataaataaagggattaaaaataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatttcactcattagaaatatactattaacaaaaaaataaataaagggattaaaaataa 680
Query: 481 aaacttgtaaggtactaagtttttatgaggtacatttcaaaccaaatatagagccagtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaacttgtaaggtactaagtttttatgaggtacatttcaaaccaaatatagagccagtgg 740
Query: 541 aaaagcagacattatctcagataaccaaatattattgattctccaaaactatacacaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaagcagacattatctcagataaccaaatattattgattctccaaaactatacacaaat 800
Query: 601 aaaggtttttatttctggatctagacagaaatttgcatagaaaaatgcataaaattacct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaggtttttatttctggatctagacagaaatttgcatagaaaaatgcataaaattacct 860
Query: 661 aacaagtcatttgtttatt 679
|||||||||||||||||||
Sbjct: 861 aacaagtcatttgtttatt 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_e16.g1 MSMg01no498_e16.g1 CHROMAT_FILE:
MSMg01no498_e16.g1 PHD_FILE: MSMg01no498_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:15 2005
(565 letters)
>mm_chr8_59876424_59877391
Length = 968
Score = 1033 bits (534), Expect = 0.0
Identities = 561/576 (97%), Gaps = 11/576 (1%)
Strand = Plus / Minus
Query: 1 tcacatctgccatgaatcaagtgactctataaatacttcctggttttgtactatgctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tcacatctgccatgaatcaagtgactctataaatacttcctggttttgtactatgctggg 573
Query: 61 gtggggaaagctccctgctctatggatgctcagcctttccacagtgaggtctctggaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtggggaaagctccctgctctatggatgctcagcctttccacagtgaggtctctggaata 513
Query: 121 tcagagggaactttggaaaactgctgagcaagccatttctaaatacttgcgagagctgag 180
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 512 tcagagggaactttggaaaactgctgagcaagtcatttctaaatacttgcaagagctgag 453
Query: 181 ggctgacaggagtcatgttaaaggagcactgaaaagataattccaatcatttttcatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggctgacaggagtcatgttaaaggagcactgaaaagataattccaatcatttttcatgca 393
Query: 241 cattttcataaacaacattatgcttgttacagaacatatacctgcagcctgtgttgcaga 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cattttcataaacagcattatgcttgttacagaacatatacctgcagcctgtgttgcaga 333
Query: 301 ggggagcaaagaacacgggttgaaggctgttgttctgtagatgttgaacactgtgtgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggggagcaaagaacacgggttgaaggctgttgttctgtagatgttgaacactgtgtgtgt 273
Query: 361 cctgcaagagtggtgtcacagcaacctcaggctcaagctctccccccgc---ccccgcca 417
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 272 cctgcaagagtggtgtcacagcaacctcaggctcaagctctccccccccacaccccgcca 213
Query: 418 tttctctctgtctctctgtttcagtttctctgtctctcta--------tctctgtctcac 469
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 212 tttctctctgtctctctgtttcagtttctctgtctctctatctctgtctctctgtctcac 153
Query: 470 gatctgtgtgtgcctgtctctttctctctgtctctttatctctttctctctgtttctctg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gatctgtgtgtgcctgtctctttctctctgtctctttatctctttctctctgtttctctg 93
Query: 530 tttctatctctgtctatttgtttctttgttcctttg 565
||||||||||||||||||||||||||||||||||||
Sbjct: 92 tttctatctctgtctatttgtttctttgttcctttg 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 968
Length adjustment: 10
Effective length of query: 555
Effective length of database: 958
Effective search space: 531690
Effective search space used: 531690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
