BAC Information

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BAC

Clone NameMSMg01-498E19
Chromosome8 (Build37)
Map Location 18,951,111 - 18,951,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5
Downstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498E19.T7 (MSMg01no498_e19.b1)MSMg01-498E19.TJ (MSMg01no498_e19.g1)
ACCAG574659AG574660
length798770
length of high quality
(start - end)		502 (47 - 548)564 (77 - 640)
definitionCHROMAT_FILE: MSMg01no498_e19.b1 PHD_FILE: MSMg01no498_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:16 2005CHROMAT_FILE: MSMg01no498_e19.g1 PHD_FILE: MSMg01no498_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGGAAGCTAGGGTTACATAGAAATACTGTGTCTCAAGCAACG
ACAGAAAACATTAAACAACTCACAGAACCCATAGAGGCCTTATTGGAAGG
AAGGTCGTCCACAAAACCCAGCCCCATACCAGAACTGGTATAGGACATAC
CCAGATACCCAATTCTTAACACAAAGGAGATTTATTACCTTAGAGGGACA
AGTGGGGCAGGAACAGGGGCAAAGGGGGCAGCAGCAAGAGCAAGGAAGCA
AGAAAAGCTGAACAGCAAGAGAAAGCATCTTTGTAGGAGTGGGCTTTTAA
GGAGAAAGGGGGTGTCCGTTCCGGGGTGAGTTGGTAATTCTGTTTGGACA
TGGTAGACAATGAGTTTTGATTGTTGGATCTTGGTGCTTCATCTCAGGAA
CGAGTCAGTGGCCAACTAAGGCAACAGATGTTGGAGGCTAGCTTTAGAAA
TGTAACATTTTTAGCAAGGGGCAGGGAAGCGGGTAAAGAGGCCACGTCTG
TGTCCAGTGTTTGCCATACTGAGGCCTGCTAGAGCCTCTTCACTTACTGT
GGGAGTCAGCTCACGCACAGCAGGCCACTGAAGTCAGTTATCCAGACAGA
AACCATAAGCTTATGATGGAGCAATAAATGGACATTAATAGGCTAGTGAT
AGTGCAAGATAAATTTGGGTCTAAGTATGGGAATCCCCTAGTACCGGAAA
GACTCCTTGTAGAATGGATGAAGGGAAGGCTTACTAGGAAGACTCCTG

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGGGGCAGAATCGCTGTAGGCC
TGACCTCTACTTAGTAATTTCCTGCCACGCCTGCTCAATGGTTATAAAAC
ATTTTTCCGCTGGGCATGGACGATTCAGAACAATCTTTGTCCCCACGTCC
ACAGTCCTATGTAACCTCTACATCGAAACAAATGTCAGGGTGATGCTTTC
CCATCTCCCAGAAAGACTTTCCGTGGGAAGGTTTACTTCTGGCTTTGGGG
GATCTGGATTAACCCTCAAGGATACCTGGGAGAAAGGTCTGAAAGCAAAG
CGGCTATTAAAGGCTCAGATGCCATTTTAGGCGTGTTTCCTTTCCCTTTT
CTGGACACACAACTGAAATTTTTCAAAAGTCCCAATCAGCTTTTCAAATT
CCTCCTCCCATGATACACATACACACATACACCACTCTGACTAGTAGTTA
AGTGGACTCTGTTTTGAGCAAACCCGCTGACTATGACCACCCATTGACTA
CCCATTTCGCTTCAGAACAAACCCATTGTGTCTTACAGTCGTTAGGAGGC
TGGGACAGCATGCAAATCTGACACAGACCGCGAGACTGCCCCCTAAGAAC
CTGTCGGTTTCTCCTGCCCCCTGTCCCCGCCTTCACCCCAACCCTACTAG
CAACTTGTAACTGACTGGGAAGAAAAGCCTCCTGTCTTGGGGGCCCCAAG
CCGAAACCTCCCCAACCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_e19.g1 MSMg01no498_e19.g1 CHROMAT_FILE:
MSMg01no498_e19.g1 PHD_FILE: MSMg01no498_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:16 2005
         (564 letters)



>mm_chr8_18950911_18951876
          Length = 966

 Score = 1048 bits (542), Expect = 0.0
 Identities = 560/566 (98%), Gaps = 2/566 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggggcagaatcgctgtaggcctgacctctacttagtaatttcctgccacgcctgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tatggggcagaatcgctgtaggcctgacctctacttagtaatttcctgccacgcctgctc 707

                                                                       
Query: 61  aatggttataaaacatttttccgctgggcatggacgattcagaacaatctttgtccccac 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aagggttataaaacatttttccgctgggcatggacgattcagaacaatctttgtccccac 647

                                                                       
Query: 121 gtccacagtcctatgtaacctctacatcgaaacaaatgtcagggtgatgctttcccatct 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtccacagtcctgtgtaacctctacatcgaaacaaatgtcagggtgatgctttcccatct 587

                                                                       
Query: 181 cccagaaagactttccgtgggaaggtttacttctggctttgggggatctggattaa-ccc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 586 cccagaaagactttccgtgggaaggtttacttctggctttgggggatctggattaacccc 527

                                                                       
Query: 240 tcaaggatacctgggagaaaggtctgaaagcaaagcggctattaaaggctcagatgccat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcaaggatacctgggagaaaggtctgaaagcaaagcggctattaaaggctcagatgccat 467

                                                                       
Query: 300 tttaggcgtgtttcctttcccttttctggacacacaactgaaatttttcaaaagtcccaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttaggcgtgtttcctttcccttttctggacacacaactgaaatttttcaaaagtcccaa 407

                                                                       
Query: 360 tcagcttttcaaattcctcctcccatgatacacatacacacatacaccactctgactagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcagcttttcaaattcctcctcccatgatacacatacacacatacaccactctgactagt 347

                                                                       
Query: 420 agttaagtggactctgttttgagcaaacccgctgactatgaccacccattgacta-ccca 478
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 346 agttaagtggactctgttttgagcaaacccgctgactatgaccacccagtgactaaccca 287

                                                                       
Query: 479 tttcgcttcagaacaaacccattgtgtcttacagtcgttaggaggctgggacagcatgca 538
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 286 tttcgcttcagaacaaacccattgtgtcttacagccgttaggaggctgggacagcatgca 227

                                     
Query: 539 aatctgacacagaccgcgagactgcc 564
           ||||||||||||||||||||||||||
Sbjct: 226 aatctgacacagaccgcgagactgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space:   529624
Effective search space used:   529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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