Query= MSMg01no498_g03.b1 MSMg01no498_g03.b1 CHROMAT_FILE:
MSMg01no498_g03.b1 PHD_FILE: MSMg01no498_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:23 2005
(527 letters)
>mm_chr8_112845597_112846524
Length = 928
Score = 725 bits (375), Expect = 0.0
Identities = 462/517 (89%), Gaps = 43/517 (8%)
Strand = Plus / Minus
Query: 5 gaattcaatctcatgcattgtttagtgggatgacagccaagccttaaagaggcagaacac 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcaatctcaaggattgtttagtgggatgacagccaagccttaaagaggcagaacac 457
Query: 65 tgctttcactttctctcccttaggtactcaaacccagccagcaaaaggtttgttgggaat 124
|||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 456 tgctttcactttctcttccttaggtactcaaacccacccagcaaagggtttgttgggaat 397
Query: 125 tacaaactggaaagcagtcaggctagtagtactaattaaggcacggagggggtcctgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tacaaactggaaagcagtcaggctagtagtactaattaaggcacggagggggtcctgcag 337
Query: 185 agtggggctctcaggccaacctgggatgttttgtttttagttccaggctcctgtcttatg 244
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 336 agtggggctctcaggccaatctggggtgttttgtttttagttccaggctcctgtcttatg 277
Query: 245 tcttgctccgtaagggtttaagg--gtttagagatagtggagaaggctgactgatgttgt 302
||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 276 tcttgctccgtaagggtttaaggcag-ctagagatagcggagaaggctgactgatgttgt 218
Query: 303 ggaatcttct---------------------------------caatt-------ttttt 322
|||||||||| ||||| |||||
Sbjct: 217 ggaatcttctcaaattcccaaacagaggttaggcatgaagtcccaatttgtttggttttt 158
Query: 323 tgtttttccttacttgatttccacatccaggaaagaccatgaagacaatttttaaacact 382
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 157 tgtttttccttacttgattcccacatccaggaaagaacatgaagacaatttttaaacact 98
Query: 383 tcctttaaggcacactctaatctccaaggataggtatatgagtatgttaaattatgcaat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tcctttaaggcacactctaatctccaaggataggtatatgagtatgttaaattatgcaat 38
Query: 443 atagagattatgttatacagtgctttgctggtgactc 479
|||||||||||||||||||||||||| ||||||||||
Sbjct: 37 atagagattatgttatacagtgctttactggtgactc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_g03.g1 MSMg01no498_g03.g1 CHROMAT_FILE:
MSMg01no498_g03.g1 PHD_FILE: MSMg01no498_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:23 2005
(489 letters)
>mm_chr8_112715903_112716791
Length = 889
Score = 785 bits (406), Expect = 0.0
Identities = 461/480 (96%), Gaps = 7/480 (1%)
Strand = Plus / Plus
Query: 1 acataaagtagtattttatgtgaatactctggccttgacctcttgaacttcttgtttcta 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 acataaagtagtattttatgtgaatactctggtcttgacctcttgaacttcttgtttcta 260
Query: 61 ccttctaagtgctggggtgtgggtgtgtgcttggcttaggtggattctacatgtatctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttctaagtgctggggtgtgggtgtgtgcttggcttaggtggattctacatgtatctaa 320
Query: 121 tagccttcacttacctctttggtcatttatttcagcatggactcaggggcattcatttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagccttcacttacctctttggtcatttatttcagcatggactcaggggcattcatttta 380
Query: 181 tcctttggttatgatctaatgttacgttcttgaaaagttagctttgattggtgtactctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tcctttggttatgatctaatgttacgttcttgaaaagttagctttgattggagtactctc 440
Query: 241 ctttgatttctatgtctctaaattgctttttacttaattatttttacataaaatatgctt 300
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggtccctatgtctctaaattgctttttacttaattatttttacataaaatatgctt 500
Query: 301 tgaccatattctttcttctcctgtaatatagttacatcatttcccccttccctttcctct 360
|||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 501 tgactatattctttcttctcctgtaatatagttacatcatttcccc-ttcc-tttcctct 558
Query: 361 caccaaaccctacaaatccccctttactctctttcatgatctgtttttagttaattgttg 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caccaaaccttacaaatccccctttactctctttcatgatctgtttttagttaattgttg 618
Query: 421 atatatatatatatat-atat--atatatatatatatatatatatatatatatatatata 477
|||||||||| ||||| |||| ||| || ||||| ||||| |||||| ||||| |||||
Sbjct: 619 atatatatat-tatatcatatccataaat-tatatgtatatttatatacatataaatata 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
