BAC Information

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BAC

Clone NameMSMg01-498O19
Chromosome8 (Build37)
Map Location 95,756,602 - 95,756,794
singlet/doubletsinglet
Overlap genenone
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22
Downstream geneAU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498O19.T7 (MSMg01no498_o19.b1)MSMg01-498O19.TJ (MSMg01no498_o19.g1)
ACCAG575130AG575131
length795797
length of high quality
(start - end)
193 (425 - 617)96 (139 - 234)
definitionCHROMAT_FILE: MSMg01no498_o19.b1 PHD_FILE: MSMg01no498_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:10 2005CHROMAT_FILE: MSMg01no498_o19.g1 PHD_FILE: MSMg01no498_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCAATTTTCCTGGAGATAAGCATAAATTCCAACACAGGGGCCA
TACAAAAACTAGTCCACAAACAACAACCTGACTTATTATAGCCAAAAGAG
GAAAGCACAAAATCTATCCACCAGTGAATCAATTAGTAAAAGTTGATAGT
CTACGCTACGGAATACTATTGAGCCGTAGAAACATACTGCAAAGGTGGAA
GAACTTCAAGATATGATAAATGAAAGAAGCCAGACACAAAAGCCAAAGAC
TGGGTGTCAGTCTACCTATATGAAGTGTCTTTGAAAAAAAATCCATCTTT
GCACTTATTTGCCAATACTTCTTGAGAACATACAGTGTTTTGAAATGTAG
GGCAACAGTGCTCAGATTAACCCCGCCTTTCTATTAGTGGATCTGAGGCT
CAGTGTGGCTGAAGGACTGACCACATCATGTAATATGAATAAAATTCCAT
GAATTCTAGGTAATTTCCACCTGCCCAGAACTACTGCAATCTGGAGGGAT
TTACTTAATGTGAAGTTATTTCCAGTAGAAAGGTAGGGGAATGCATAAGT
TCCTCCACTCACCATAGTAGCTTTCAGCCAGTAACTGCTTGGAACTGGAA
TATAGGCCTCCATTCCCCACCTTGGGTACTCTACCTGAAATTACTCTCTT
TTTCCTGAGTTTTCTGGCAGTATTAATTCTGGTCCACCCCGAGGCTAACA
ATATCCAAGTAGTTCTTCTTTCATGCTTTCTTTTCCAAGGTTCAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAGTAAGTTAATGATTAGGA
GCAGCTGGAGCCACTCTCCTTGCCACCAATGTAGCAATGATGGACACTAA
CTACAGAACTTAGGAAGTCAGGTAACCCAGGGCTTGTTTGTATTGGAAAT
GTCCATTGAAAAGCTAGAGGAACAGCCTCTGTAGCTGAGGTAGTCTTGCT
ACGAGGCATGACACTTAGTCTGCTTTATGCAGACTGGGGGAGTTGCTGTA
TGATCTTGCTTCCATGCCACTCATTCTTTTATTGCTGGAGATAATTTGAC
TGTGCTTTGGAAATGTCTTATAGAATGGGTAAAGACTGTGAGTGGAGGAA
ATGAAGGGCTCACGATTTCACTCTCACGTTCCCCATGGCTGACACCTCTG
CTGTCACAGGTTGCAGGGCCTCTAGCCCTTCGATTACTACTGATCACTGT
TGACCCCTGCATCTTTAACACCGTAACTTGATCTATAAATTCACACTTAG
AAGGTTTTACGATAATTGCTATTGAATCCCAATATGGATGGGTACCCACT
GCAGAGTCAGTCAAACCACGGTTCATGGGGAAGGAAGAAAATGCTGATGA
ACATTATGCTAAAAGGGTAAATTTACTGTGCCAAGCTTGAAAAAACAAAA
TTGTTGTTAACTGTGTATAACACATGAAGGAATTGTTTTCTACCTTGAGT
GAACCCTGTCTGCTGGCCAAAGATAGACCACTTCTCTTAATTGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_o19.b1 MSMg01no498_o19.b1 CHROMAT_FILE:
MSMg01no498_o19.b1 PHD_FILE: MSMg01no498_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:10 2005
         (193 letters)



>mm_chr8_95756402_95756994
          Length = 593

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctttctattagtggatctgaggctcagtgtggctgaaggactgaccacatcatgtaat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gcctttctattagtggatctgaggctcagtgtggctgagggactgaccacatcatgtaat 260

                                                                       
Query: 61  atgaataaaattccatgaattctaggtaatttccacctgcccagaactactgcaatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaataaaattccatgaattctaggtaatttccacctgcccagaactactgcaatctgg 320

                                                                       
Query: 121 agggatttacttaatgtgaagttatttccagtagaaaggtaggggaatgcataagttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggatttacttaatgtgaagttatttccagtagaaaggtaggggaatgcataagttcct 380

                        
Query: 181 ccactcaccatag 193
           |||||||||||||
Sbjct: 381 ccactcaccatag 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)