Query= MSMg01no499_a14.b1 MSMg01no499_a14.b1 CHROMAT_FILE:
MSMg01no499_a14.b1 PHD_FILE: MSMg01no499_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:19 2005
(325 letters)
>mm_chr8_60017196_60017920
Length = 725
Score = 598 bits (309), Expect = e-175
Identities = 321/325 (98%)
Strand = Plus / Plus
Query: 1 ctctgtccttatttatagcatgcgattactgagctttgggtcctgttctctacctccttg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctggccttatttatagcatgcgattactgagctttgggtcctgttctctacctccttg 260
Query: 61 cttagtgtctttgttggctgccacctgcttatcaaaccaagaggcggggaatctcttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagtgtctttgttggctgccacctgcttatcaaaccaagaggcggggaatctcttagt 320
Query: 121 gtggcactaaagactctttagcatggctctgactgctccggcccactttgtctttagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggcactaaagactctttagcatggctctgactgctccggcccactttgtctttagtgg 380
Query: 181 cttccctgatcacactccttgacctcacctaacggcggccgcacttgctcttcacactca 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cttccctgatcacactccttgacctcacctaacggcagccgcacttgctcttcacactca 440
Query: 241 gacccttgcccctacccttgttctacacacgtaggaggcctgcctctctcctccctttat 300
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 441 gacccttgcccctacccttgttctacacacttaggaggcccgcctctctcctccctttat 500
Query: 301 ctctgcttatggaagcatcttattt 325
|||||||||||||||||||||||||
Sbjct: 501 ctctgcttatggaagcatcttattt 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_a14.g1 MSMg01no499_a14.g1 CHROMAT_FILE:
MSMg01no499_a14.g1 PHD_FILE: MSMg01no499_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:19 2005
(624 letters)
>mm_chr8_60163294_60164317
Length = 1024
Score = 870 bits (450), Expect = 0.0
Identities = 558/628 (88%), Gaps = 57/628 (9%)
Strand = Plus / Minus
Query: 1 aaggcagtacttcaaagtgtttctaggaaaggcggcattttcctcccacccccaaatggc 60
|||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 615 aaggcagtacgtcaaagtgtttctaggaaa-gcggcattttccttccacccccaaatggc 557
Query: 61 agtaaaacacagcaaatctggaaacagtctctctctctctctctctctctctctctctct 120
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 556 agtaaaacacagcaaatctggaaacag----------------tctctctctctctctct 513
Query: 121 ctctctctcatacacaacaaaatcctactatcaagatcactccaaccattctccaaagta 180
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 512 ctctctctcatacacaacgaaatcctactatcaagatcattccaaccattctccaaagta 453
Query: 181 tgattctaaaatattccagttagtcaatgaggattcacctcattgggaaagttgagcaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggattctaaaatattccagttagtcaatgaggattcacctcattgggaaagttgagcaaa 393
Query: 241 gtgttggaactttatggcttgactctaactgtggatgttccagaacacatgttgagatag 300
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgttggaacctcatggctcgactctaactgtggatgttccagaacacatgttgagatag 333
Query: 301 atagatagatatatatagccgggcgtggtggtgcacacctttaagcccagcacttgggag 360
||| |||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 332 ata--------tatatagccgggcgtggtggcgcacgcctttaatcccagcacttgggag 281
Query: 361 gcagaggcaggtgaatctctgagttcaaggccagcctggtctacaaagtgagttccagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcagaggcaggtgaatctctgagttcaaggccagcctggtctacaaagtgagttccagga 221
Query: 421 cagccaaggctacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaagaaacc 480
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 220 cagccaaggctacacagagaaaccctgtctcaaaaaa------------aaaaag----- 178
Query: 481 cccaaaaaatgttaccacagagatagatatata----atattatatattaatacatgata 536
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 177 -----------ttaccacagagatagatatatatataatattatatattaatacatgata 129
Query: 537 taatattttattaaaatataataatacatatatgaatgtatattgaatgtatttctgacc 596
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 128 tgatattttattaaaatataataatacatatatgaatatatattgaatgtatttctgacc 69
Query: 597 aggtcatagaaacttcaaaaatcttcga 624
||||||||||||||||||||||||||||
Sbjct: 68 aggtcatagaaacttcaaaaatcttcga 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
