BAC Information

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BAC

Clone NameMSMg01-499C06
Chromosome8 (Build37)
Map Location 23,189,027 - 23,189,639
singlet/doubletsinglet
Overlap geneNek5
Upstream geneLOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11
Downstream geneNek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499C06.T7 (MSMg01no499_c06.b1)MSMg01-499C06.TJ (MSMg01no499_c06.g1)
ACCAG575295AG575296
length793748
length of high quality
(start - end)
59 (267 - 325)556 (60 - 615)
definitionCHROMAT_FILE: MSMg01no499_c06.b1 PHD_FILE: MSMg01no499_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:27 2005CHROMAT_FILE: MSMg01no499_c06.g1 PHD_FILE: MSMg01no499_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGATCAGGCGG
ANNCANNAAGGNGAGTGACTAAAAAAGGGGGAAAANAACNNCNNGAAAAG
GAANAANNNANNNCANAANTTATTAACCCCACNCNGAGCATCNCAACAAG
CCCCAGAAAAAAAGGAAATCAAAGAACGGAAAACAGGACACGACCCCAAA
CCCCCNCTGGAAGNGNGAGCACAAAGGGAAAGCAACGGCAAAACAAGCCA
AGCTGAGTTATATCTGTAGGAAACGGGAGACCACGGAGCTGTAGGCCTGC
TAAATATATTCCAAATTACAGAACGTTTTTTTTTTAAGCTGGAAGAGGAT
GTTTAAGGATTACCTCTTATATGTATTTGTCGGTTTCTTTTCTTTTTTCT
TCAAGTTTCCTTTCTATACCTACAATTCCAACAGCTCTTACTCTTCCTGG
CTGGGGGGGGGGGGGGGACATAATAAAAAACAAGTTGCTCATAAAACATC
ACAATTTGGCAAGTAAACAGAACCCCTCTGTATTTATCACTGATGTTTCA
AAGGTGGTGAAGAAACCAAAAAAGAGCGCACAAGTTTTAGTCATCCCGCT
TCCGTTTTAAAACACTTTTTTTTTGTTGCCCATTTTGAATTTTTAAAATA
TAAAGGTAAAAAATAACTTTTATTTTCAATGTGTTTGTCATTGTAATACC
TTTTGCCCTTTCGCGCGTATTGTTCCTATTATTTTTATTACTTCTTTTTT
TACACCCTTGTGATAATTTTTCTCTATTATTTTACTATTTGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
TCAATACTTGATCCCCCTGCCTTCCTGCCTGTAACTCTCAAGTGTTAGGA
TTATAGATATGTATCTTGGTGTGAAACAAACTTACGATTCAACCATAAAA
CAGAAAAAAATCTGCTACACATAGCCATGCATGCATCTCTGCACACACAT
GCACACAGCAGAAAAGGGAAAAGGCAGACAGAGCCCAAACAAATCCATGT
ATCATGTACAACTTGGTCTCCTTAACTAGTTTCTATGGGCCATCTTCTTC
TTTTTCTTCTTTTTTAAGATTTATTTATTTATTATATGTTAGTACACTGT
AGTTGTTTTCAAACACACCAGAAAAAGGGCATCCAATCTCATTACAGATG
GTTTTGAGCCACCATGCGGTTGCTGGGATTTGAACTCAGAGCCTTTGGAA
GAGCAGTCAGTGCTCTTCACCGCTGAGCCATCTCTCCAGCCCTATGGGCC
ATCTTCCATCTCACTTGTACCCAACACTACTCACATGTCATCTTCATCCG
ATCCTGGTTCCAGCTGTTCATCATCCACCATGATGCCCGTGGCTATTTCT
ACCTTTTCCTGGTCTTCTTTAGGGAGCTGTGGTTTGATCATTACTACTGG
AAGAAATGACAAAGATGAAAGTAGACTACTCTGTGTACTTGAGGAGCAGC
ATACACCCACAATCCCACCATGAATGCCACTCATGATGGAAACCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_c06.g1 MSMg01no499_c06.g1 CHROMAT_FILE:
MSMg01no499_c06.g1 PHD_FILE: MSMg01no499_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:27 2005
         (556 letters)



>mm_chr8_23188884_23189839
          Length = 956

 Score =  888 bits (459), Expect = 0.0
 Identities = 547/613 (89%), Gaps = 57/613 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatccccctgccttcctgcctgtaactctcaagtgttaggattatagatatgtatcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 144 gatccccctgccttcctgcctgtaactctcaagtgttaggattatagatatgtatcttga 203

                                                                       
Query: 61  tgtgaaacaaacttacgattcaaccataaaacagaaaaaaatctgctacacatagccatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 tgtgaaacaaacttacgattcaaccataaaacagaaaaaaatctgctacacatagccacg 263

                                                                       
Query: 121 catgcatctctgcacacacatgcacacagcagaaaagggaaaaggcagacagagcccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgcatctctgcacacacatgcacacagcagaaaagggaaaaggcagacagagcccaaa 323

                                                                       
Query: 181 caaatccatgtatcatgtacaacttggtctccttaactagtttctatgggccatcttctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 caaatccatgtatcatgtacaacttggtctccttaactagtttctatgggccttcttctt 383

                                                                       
Query: 241 ct--------------------------------------------------------tt 244
           ||                                                        ||
Sbjct: 384 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 443

                                                                       
Query: 245 -ttcttcttttttaagatttatttatttattatatgttagtacactgtagttgttttcaa 303
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 cttcttcttttttaagatttatttatttattatatgttagtacactgtagctgttttcaa 503

                                                                       
Query: 304 acacaccagaaaaagggcatccaatctcattacagatggttttgagccaccatgcggttg 363
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 504 acacaccagaaaaagggcatccaatctcattacagatggttgtgagccaccatgtggttg 563

                                                                       
Query: 364 ctgggatttgaactcagagcctttggaagagcagtcagtgctcttcaccgctgagccatc 423
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 564 ctgggatttgaactcagagccgttggaagagcagtcagtgctcttcactgctgagccatc 623

                                                                       
Query: 424 tctccagccctatgggccatcttccatctcacttgtacccaacactactcacatgtcatc 483
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 tctccagccctatgggccatcttccatctcacttgtacacaacactactcacatgtcatc 683

                                                                       
Query: 484 ttcatccgatcctggttccagctgttcatcatccaccatgatgcccgtggctatttctac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcatccgatcctggttccagctgttcatcatccaccatgatgcccgtggctatttctac 743

                        
Query: 544 cttttcctggtct 556
           |||||||||||||
Sbjct: 744 cttttcctggtct 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)