GTTTCAGAAACGCGGAATTCTTTTTTTTCCATTCTTATAAAGTATTTAGC
TCATTTACATTTCCAATGCTATACCAAAAGTCCTCCATACCCACCCCTAC
TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTTCCCTGTACTG
GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCC
GACTAGGCCATCTTTTGATACATATGCAGCTAGAGGCAAGAGCTTCGGGG
TACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGTTTTTCTCTTT
AGTTCCTTGGGTGCTTTCTCTAGTTTCTCCATTGGGCGCCCTGTGGTCCA
TTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCTGGCA
TAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAATATCTTGCT
AGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATCATGGGATGGATCTC
TGGATATGGCAATCACTAGATGGTCCATCAAGATATAATTTGCTAAAAAC
ATTAAACTCACGAAAACGAAGAACAAAGTGTGGACACTTTTGCCCCTTTT
TAGAATAGGAAACTTAACATAGAATTCCTTACTGATGAATATCTTATGGC
TTGACAAGCTCCTCAAGGAAATTGTTCAATAN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCGCAATCATTGCAGGAACAGTGCCTATTAGAAAATGATCGTCAT
TCTGAGGTACGTAGATTTATATTCCTTGATCTCAGGTTTCCTCAAAAACA
TTCAAATTATATTTATGTTTTCACTGTTTACCATTATCTTAAATCAAGTA
TATGACTATTAAACCAATGGAAATGAAGGTTAATGCTATCCAATGTGAGT
TGTGTTTATTTATATCTGTATTTATAATCTCAGGATGTCAGATTATATTG
ACTGTTATTCATTCTGAGTTCAGCTACAAAGGAGACCTAACTATGGAGGT
TCATGCTTTATGACAAAAGTCAGGGCCAAATGGTATCATAGTAAATGTGA
TGAAAAATTCAGAGTTGTTTAAATGGAAAAATGAAACAGAATTATGAAAG
AGTTGGATGACAATTGGCCCATTGGTATAAATTCATTATGTTTATTTTGT
GATTAACAATTCAGTTTTGCAAAACCAAGCCAAAACATGTATAATTACAT
TAAATTTGTTAGTTGGATGTTAGTGACTTTATCTTGAACCCATATCTAAT
TTATAAAGTATTTTTGGATTTATAGTTATTTCTTTATTTGGAGATTCGAC
ATGGTTTTGTTTGTAAATGTTGTAATAAAAGGGCACAAATAATTGAAGCT
GATGTAGGATACTATTGTATTTATACTCATAGTTTTCTTCTTTAAGAATT
ATATTTTAAN

Query= MSMg01no499_d02.g1 MSMg01no499_d02.g1 CHROMAT_FILE:
MSMg01no499_d02.g1 PHD_FILE: MSMg01no499_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:31 2005
         (581 letters)



>mm_chr8_5770955_5771938
          Length = 984

 Score = 1044 bits (540), Expect = 0.0
 Identities = 572/584 (97%), Gaps = 3/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaggaacagtgcctattagaaaatgatcgtcattctgaggtacgtagatttatattcc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 784 tgcaggaacagtgcctattagaaaatgatcgtcattctgaggcacgtagatttatattcc 725

                                                                       
Query: 61  ttgatctcaggtttcctcaaaaacattcaaattatatttatgttttcactgtttaccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttgatctcaggtttcctcaaaaacattcaaattatatttatgttttcactgtttaccatt 665

                                                                       
Query: 121 atcttaaatcaagtatatgactattaaaccaatggaaatgaaggttaatgctatccaatg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 664 atcttaaatcaagtatatgactattaagccaatggaaatgaaggttaatgctatccaatg 605

                                                                       
Query: 181 tgagttgtgtttatttatatctgtatttataatctcaggat---gtcagattatattgac 237
           ||||||||||| ||||||| |||||||||||||||||||||   ||||||||||||||||
Sbjct: 604 tgagttgtgttaatttatacctgtatttataatctcaggatgaagtcagattatattgac 545

                                                                       
Query: 238 tgttattcattctgagttcagctacaaaggagacctaactatggaggttcatgctttatg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgttattcattctgagttcagctacaaaggagacctaactatggaggttcatgctttatg 485

                                                                       
Query: 298 acaaaagtcagggccaaatggtatcatagtaaatgtgatgaaaaattcagagttgtttaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 acaaaagtcagggccaaatggtatcatagtaaatgtgatgaaaaattcagagttgtttaa 425

                                                                       
Query: 358 atggaaaaatgaaacagaattatgaaagagttggatgacaattggcccattggtataaat 417
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 424 atggaaaaatgaaacagaattatgaaagagttggataacaagtggcccattggtataaat 365

                                                                       
Query: 418 tcattatgtttattttgtgattaacaattcagttttgcaaaaccaagccaaaacatgtat 477
           ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 364 tcagtatgtttattttgtgattaacaatttagttttgcaaagccaagccaaaacatgtat 305

                                                                       
Query: 478 aattacattaaatttgttagttggatgttagtgactttatcttgaacccatatctaattt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aattacattaaatttgttagttggatgttagtgactttatcttgaacccatatctaattt 245

                                                       
Query: 538 ataaagtatttttggatttatagttatttctttatttggagatt 581
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ataaagtatttttggatttatagttatttctttatttggagatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 984
Length adjustment: 10
Effective length of query: 571
Effective length of database: 974
Effective search space:   556154
Effective search space used:   556154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)