BAC Information

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BAC

Clone NameMSMg01-499D08
Chromosome8 (Build37)
Map Location 107,535,044 - 107,535,467
singlet/doubletsinglet
Overlap geneEG436059
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058
Downstream geneEs31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499D08.T7 (MSMg01no499_d08.b1)MSMg01-499D08.TJ (MSMg01no499_d08.g1)
ACCAG575347AG575348
length745754
length of high quality
(start - end)
605 (66 - 670)643 (60 - 702)
definitionCHROMAT_FILE: MSMg01no499_d08.b1 PHD_FILE: MSMg01no499_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:32 2005CHROMAT_FILE: MSMg01no499_d08.g1 PHD_FILE: MSMg01no499_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAACGCNGGATTCTTTGTT
CAGTTTCGAACCACATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCTTT
TGTCAATTCTCGATCTTACAGCACATGCCATTGCTGTTCTGTTCAGGAAT
TTTTCTTCTGTGCCCTTTTCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCCCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTATATTCCATTGGTCTACTTGTCTA
TTTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTATAGTAAAG
CTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAA
GAGTTTTTGCTATCCTANGTTTTTTGTTATTCCAGATGAATTTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGGTCTATTAGTTCATAGTAGGTTCCACTGGGATGTCTAC
GAAAACCCCGGGAGGCTCCACCCCAGCGGCACTGTCAAGGTTTCCCCCCA
GAATGCCTTGCTAGCTGTGAGGGTGGGACCATGGCTTTTGAGATTCCGGA
ACTATACAAAATCAGGCAATTGGCAGCAGCAGCAGCCTCTGAAAGCCAGG
AGGCCATGGCACACACTGTGAGAGAGCACCAGGGTGGCGGTTCGAATATG
AATGCTCTCCTTGTGCCCAGATGTTTGAATATTTGATCCCCAGTTGGTGG
CGCTGTTTCAGTTCGTTTGGAAGGCGTGGTTTCGCTGGAGGAAGTCACTA
GGCTTGCTTTTGAGGTTTCAAAAACTATGCACTATTTTCAATTTCAGTCT
CTTAGAGTGTGAGATGTGAGCTTTACACTCCATCTGTCGCCAAATCTGCA
TCTGACTGCCATGGTAGCTTTGCCATTCTGGACTTGTATTTTTCTGAAAC
TATAAGCCCAAATAAACCCTTCCTTGTATAAGTTGCTTTGGTCATGTGAC
AGGAATAAAAAAAAGTAACTAGTATAGCAAGCAGTGTCACATGGATGGGG
ACACTTGAGTCTCTGGGGTCCAGTGCCTGTTCCCATGAGCACAGCATGCT
GGACTTGCAGTTTTGAGAGACTATCTCTCCTGCTTGGTTTTTTTTTTTTT
TGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_d08.g1 MSMg01no499_d08.g1 CHROMAT_FILE:
MSMg01no499_d08.g1 PHD_FILE: MSMg01no499_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:33 2005
         (643 letters)



>mm_chr8_107535044_107536086
          Length = 1043

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtctattagttcatagtaggttccactgggatgtctacgaaaaccccgggaggctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caggtctattagttcatagtaggttccactgggatgtctacgaaaaccccgggaggctcc 365

                                                                       
Query: 61  accccagcggcactgtcaaggtttccccccagaatgccttgctagctgtgagggtgggac 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 accccagcggcaatgtcaaggtttccccccagaatgccttgctagctgtgagggtgggac 305

                                                                       
Query: 121 catggcttttgagattccggaactatacaaaatcaggcaattggcagcagcagcagcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catggcttttgagattccggaactatacaaaatcaggcaattggcagcagcagcagcctc 245

                                                                       
Query: 181 tgaaagccaggaggccatggcacacactgtgagagagcaccagggtggcggttcgaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 244 tgaaagccaggaggccatggcacacactgtgagagagcaccagggtggcggttcgaatac 185

                                                                       
Query: 241 gaatgctctccttgtgcccagatgtttgaatatttgatccccagttggtggcgctgtttc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaatgctctccttatgcccagatgtttgaatatttgatccccagttggtggcgctgtttc 125

                                                                       
Query: 301 agttcgtttggaaggcgtggtttcgctggaggaagtcactaggcttgcttttgaggtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 124 agttcgtttggaaggcgtggtttcgctggaggaagtcactaggcttgcttttgaggtctc 65

                                                                       
Query: 361 aaaaactatgcactattttcaatttcagtctcttagagtgtgagatgtgagctttacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 64  aaaaactatgcactattttcaatttcagtctcttagagtgtgagatgtgagctctacact 5

               
Query: 421 ccat 424
           ||||
Sbjct: 4   ccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)