Query= MSMg01no499_e13.b1 MSMg01no499_e13.b1 CHROMAT_FILE:
MSMg01no499_e13.b1 PHD_FILE: MSMg01no499_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:38 2005
(361 letters)
>mm_chr8_98325902_98326662
Length = 761
Score = 659 bits (341), Expect = 0.0
Identities = 356/361 (98%)
Strand = Plus / Plus
Query: 1 aaagctaggaactgtaggacccatcataatcctggtgtagaaagaatcccgggacttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctaggaactgtaggacccatcataatcctggtgtagaaagaatcccgggacttgtg 260
Query: 61 ggccagctggccacatatgcagtagaaaacaacagacggtcaaagtggcaagtaaaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagctggccacatatgcagtagaaaacaacagacggtcaaagtggcaagtaaaggcc 320
Query: 121 aacccttgaggttgtcctctgacagccacactaatgccaaggccatttgtgcctgcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacccttgaggttgtcctctgacagccacactaatgccaaggccatttgtgcctgcattc 380
Query: 181 acacaatctatgttgtgttcttcaaagtagcatcaatcactcaacatctcctgtaacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaatctatgttgtgttcttcaaagtagcatcaatcactcaacatctcctgtaacaag 440
Query: 241 gtgaccatctcttattacacaaagttctgtgtctgaggcaggctttcactttcaactttc 300
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaccatcacctaccacacaaagttctgtgtctgaggcaggctttcactttcaactttc 500
Query: 301 acgttgctctactactcaagatagcagtctcagctgggcgtggtggcacacgcctttaat 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgttgctctactactcaagatatcagtctcagctgggcgtggtggcacacgcctttaat 560
Query: 361 c 361
|
Sbjct: 561 c 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_e13.g1 MSMg01no499_e13.g1 CHROMAT_FILE:
MSMg01no499_e13.g1 PHD_FILE: MSMg01no499_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:38 2005
(646 letters)
>mm_chr8_98516840_98517887
Length = 1048
Score = 1050 bits (543), Expect = 0.0
Identities = 589/605 (97%), Gaps = 2/605 (0%)
Strand = Plus / Minus
Query: 1 ccagatgctcccaggtaatatgcttgcttctcccaccagagtttcatgcctg--aaaaaa 58
|||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 605 ccagatgctcccgggtaacatgcttgtttctcccaccagagtttcatgcctgaaaaaaaa 546
Query: 59 aaaaaaaaacaggaactttaggaaatgataaagggtggtgatgatgtgatgatggtgaca 118
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 545 aaaaaaaaacaggaactttaggaaatgataaagggtgatgatgatgtgatgatggtgaca 486
Query: 119 ggtactagaggagaaagagacagaaagaagatatagaataatcataattaatggttaaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtactagaggagaaagagacagaaagaagatatagaataatcataattaatggttaaaa 426
Query: 179 cctgtgcagttaggatctgtttattgaatgcctactaagtgttaaagaaacagctgataa 238
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 425 cctgtgcagttaggatctgtttgttgaatgcctactaagtgttaaagaaatagctgataa 366
Query: 239 caggaagactttgtttctgtccctgggagctttctgtttattggagaaatgacatctgtg 298
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caggaagacatggcctctgtccctgggagctttctgtttattggagaaatgacatctgtg 306
Query: 299 agccaattatcacagcatagcattaactatccataaaaagtaaacacacttcacctagct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agccaattatcacagcatagcattaactatccataaaaagtaaacacacttcacctagct 246
Query: 359 ccctagctatttcactaatagtagtaataactattagaattatcatattagttacttttg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccctagctatttcactaatagtagtaataactattagaattatcatattagttacttttg 186
Query: 419 tctcacagatcctaacaaagagagcttacaggaggaaagatcaatttttgctcacgcctt 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tctcacagatcataacaaagagagcttacaggaggaaagatcaatttttgctcacgcctt 126
Query: 479 cagtaggtttctcggtccatcatggtggggtaagggtggcaaagcagcctgattcatggt 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagtaggtttctcggtccatcatagtggggtaagggtggcaaagcagcctgattcatggt 66
Query: 539 gataggagcacgtgatagaaattgtttctatcaccaagaaacctgtaatagtcaacccct 598
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 65 gataggagcacgtgatagaaactgtttctatcaccaagaaacgtgtaatagtcaacccct 6
Query: 599 agtga 603
|||||
Sbjct: 5 agtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space: 660168
Effective search space used: 660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
