BAC Information

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BAC

Clone NameMSMg01-499M05
Chromosome8 (Build37)
Map Location 45,198,896 - 45,199,248
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499M05.T7 (MSMg01no499_m05.b1)MSMg01-499M05.TJ (MSMg01no499_m05.g1)
ACCAG575768AG575769
length783769
length of high quality
(start - end)
244 (75 - 318)354 (327 - 680)
definitionCHROMAT_FILE: MSMg01no499_m05.b1 PHD_FILE: MSMg01no499_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:13 2005CHROMAT_FILE: MSMg01no499_m05.g1 PHD_FILE: MSMg01no499_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGCGTAGCTCGCCGGAAT
TCTTTGTTCAGTTCAAGAACACAGTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGTCTTTCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTCTTCTGT
TCAGGAATTTTTCCCCTGTGTTTTTTTCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATCCTTATTCCATTGGTCT
ACTTTGTCTGTCTTCTATACCAGTACCTGTGTGTTAGGTATCAGAGTAAT
AGCGGCTTCTTATTTTTGTATTGGGTAGAACTCCTTTCTACCTCTACCTT
GTGGAAATAGTTTGGTGCAAAACTGGGTTTTTTAATCTTCTTTTGAAGGT
TTTGATTTGAATTCTTGCACTATTCCCGCTCTG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTGCGGAAATAAGACTATTCCTTACTTCTATGTGATTCAG
TGTTTCTGAACTTATGTTGAGGTACTTGATAACATTTGGAATTAAATTTT
GTAAAGGGTGATAAACCAGATTCTGTATTCTGACTAATAAATGGCATAAT
TTTATGGTCAAACTTGTAGGGAACTGAATTCCAGTATAAGGATGGTATTT
TTTATCCATCCTTTTGCCTTCTTGTTGGAATTATGTCTGGATCTTCAATT
CAATTCAAATGATGAGTATCNCTGNTTTTATAGCAATACAATAGGTTTCT
TTTGCTATATCTCTGTAGTAAAATTTGAGATTAGAAACAGTGTAATGAGA
AGCTTTAACTATGGTAAGCAGAATCTTATTACTTGAGAAGTCGAGCATCA
AATGTTCTCAGGGAAAGCAGGAAAGCCACACAGAGCTTGAAAGAGCCAAT
GCAGGCAGACAGTAAAGTAGCATAGTTGGGAGACTGTATTAGTTTGCTAT
GGCTACTGTAAGAAGATAGCCAAAACTAATAAATGGCATAATTTTACGGT
CAAATTTGTAGGGAAACAGAATTCCAGTATAAGGATGGTATTTCTGAGCC
ATCCTTCTGCCTTCTTATGGTTCTTTTTTGTTGTTGATGTTTTGGATTGG
TTTTGTTTTGTTTGCTTTTTGCTTTTTTATCACTTTGGACTTCCTCTCTG
CGTTCTATGGGTGACTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_m05.g1 MSMg01no499_m05.g1 CHROMAT_FILE:
MSMg01no499_m05.g1 PHD_FILE: MSMg01no499_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:14 2005
         (354 letters)



>mm_chr8_45198630_45199382
          Length = 753

 Score =  638 bits (330), Expect = 0.0
 Identities = 348/354 (98%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatagcaatacaataggtttcttttgctatatctctgtagtaaaatttgagattagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 619 tttatagcaatacaataggtttcttttgctatatctctgtagtaaaaattgagattagaa 560

                                                                       
Query: 61  acagtgtaatgagaagctttaactatggtaagcagaatcttattacttgagaagtcgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acagtgtaatgagaagctttaactatggtaagcagaatcttattacttgagaagtcgagc 500

                                                                       
Query: 121 atcaaatgttctcagggaaagcaggaaagccacacagagcttgaaagagccaatgcaggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 atcaaatgttctcagggaaagcaggaaagccacacagagcttgaaagagccaatgcagac 440

                                                                       
Query: 181 agacagtaaagtagcatagttgggagactgtattagtttgctatggctactgtaagaaga 240
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 agacagtatagtagcatagttggaagactgtattagtttgctatggctactgtaagaaga 380

                                                                       
Query: 241 tagccaaaactaataaatggcataattttacggtcaaatttgtagggaaacagaattcca 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 379 tagccaaaactaataaatggcataattttacggtcaaatttgta-ggaaacagaattcca 321

                                                                 
Query: 301 gtataaggatggtatttctgagccatccttctgccttcttatggttcttttttg 354
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gtataaggatggtatttctgagccatcattctgccttcttatggttcttttttg 267



 Score =  120 bits (62), Expect = 1e-31
 Identities = 77/82 (93%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 259 ggcataattttacggtcaaatttgtagggaaacagaattccagtataaggatggtatttc 318
           |||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 753 ggcataattttatgctcaaacttgtaggg-aacagaattccagtataaggatggtatttc 695

                                 
Query: 319 tgagccatccttctgccttctt 340
           |||||||||||| |||||||||
Sbjct: 694 tgagccatccttttgccttctt 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 753
Length adjustment: 9
Effective length of query: 345
Effective length of database: 744
Effective search space:   256680
Effective search space used:   256680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)