BAC Information

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BAC

Clone NameMSMg01-499M07
Chromosome8 (Build37)
Map Location 58,350,565 - 58,350,806
singlet/doubletsinglet
Overlap geneAdam29
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499M07.T7 (MSMg01no499_m07.b1)MSMg01-499M07.TJ (MSMg01no499_m07.g1)
ACCAG575772AG575773
length767690
length of high quality
(start - end)
242 (75 - 316)247 (48 - 294)
definitionCHROMAT_FILE: MSMg01no499_m07.b1 PHD_FILE: MSMg01no499_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:14 2005CHROMAT_FILE: MSMg01no499_m07.g1 PHD_FILE: MSMg01no499_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTAAACGACTCACAAAGTCCGTATTGGGCGGNAATC
TTCCACAATCCCCAAAATAGGGTTACATTTTATGTAAGTAGGTCCCTGAA
GACCACAATGGCCATAACGATCACCTTTAGTGTTTATTTCTCTGTAGCAA
TGTACACTTGCAGTCTTTGCATTCTGGCCAAAAATTTGCCTACAGTGCTC
ATTGCGGTCATTACATTGCTTTTCATAGCAATAGGCTGAGACCCCACAGG
GAATTCCATCTTCTACATAAGCATCATCTGGACATTCATGGGACGTCCCA
TTGCACCACTCTGGAATGTTTTATATGTTATCCCTTTTTCTACACAGAGT
CCCTGATGGTAAAAACTGACAGTTTTTGCAGCAAAGTCCAAAGGCACAGG
AAGACCCAGTACTCACAGTGCAGTTTGACATGCATCAAAGGTCATTTGTA
CAATTCCTTAATGATCCACAGTCACATTGTTCTTTGTCTTCAACAACACC
ATTTCCACAGCGTGTCCTGTCAAAGATATCCTTTGTGTACATGTTTTCCA
TCAAACACCTTGTGTTCTTTACAGTGTAAGACCAAAAGTAATTATAGCTA
CAATTGCTGAATTTGGGTATCGGTGGTCTGTCCATGTGCTTTATACATTT
ACTTGTACTACCCTTACTTATTACTTCTTCATGTTTCATGCCCTAAATTT
TGACCTAAGTGATGTACCTCTTCATTGGCACGAAAGTTTAAATATCTGTC
TATGAAAATACCACTGT
GGGCGTCCCCATCGGGNGAACNANAGAAGGNATTGCGATTACAAGGATTT
TAGGGAAGTCAGGGGCTCCCAGGACCCAATGGGTATGATATTACCTAAAA
TACTCAACAAAAGGAAATCCAACATGTGAAGACAAATTCCAGTAGATAGA
CACAATACTCAGTTGAGGGATGTCTCCATCTATTCATCTCAAAAATTTTA
ACCCAGACATGCTCCTGTCAATGTTTTTACAGGGACAGAGACTGAAGGAA
AGACAATCCAGAGAAAGCCCCACCTAGGGATTCATCCCATTCACATCACT
TAACCCCATACTATTGCTGATGCCAAGATGTTTCTGTTAACAAGAGGATG
GTATGGCTGTTTCCTGAGTTGTACTACCAGCACCTGACCAATACAGATGC
AGATACTCACAGCAAATGATTGGCCTGAGCCCACGGTCCACAATGGAAGA
GCTGAAGGAAGGACTTCAAGGGGAAGGACTGAAGGAGCTGAAGATAACTG
CAGTCCCATAGGAAGAACAATATCAAGTATTCAGACCACCAGATCTTAAG
GGACTATGCCAACAAACAAAGAGTATACATGGTGGGATCCATAGATCCAG
ATACATACATACCATTGGATGTGCTTATCTGACATCTATAGGAGGGGAAG
CTCTTGGTCTTATGGAGGCTTGATGTCCCCGCGTAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_m07.b1 MSMg01no499_m07.b1 CHROMAT_FILE:
MSMg01no499_m07.b1 PHD_FILE: MSMg01no499_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:14 2005
         (242 letters)



>mm_chr8_58350365_58351006
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttatgtaagtaggtccctgaagaccacaatggccataacgatcacctttagtgtt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 acattttatgtaagtaggtccctgaagaccacaatggccaaaacgatcacctttagtgtt 260

                                                                       
Query: 61  tatttctctgtagcaatgtacacttgcagtctttgcattctggccaaaaatttgcctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttctctgtagcaatgtacacttgcagtctttgcattctggccaaaaatttgcctaca 320

                                                                       
Query: 121 gtgctcattgcggtcattacattgcttttcatagcaataggctgagaccccacagggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctcattgcggtcattacattgcttttcatagcaataggctgagaccccacagggaat 380

                                                                       
Query: 181 tccatcttctacataagcatcatctggacattcatgggacgtcccattgcaccactctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatcttctacataagcatcatctggacattcatgggacgtcccattgcaccactctgg 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)