BAC Information

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BAC

Clone NameMSMg01-499N15
Chromosome8 (Build37)
Map Location 3,278,283 - 3,278,615
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499N15.T7 (MSMg01no499_n15.b1)MSMg01-499N15.TJ (MSMg01no499_n15.g1)
ACCAG575835AG575836
length705764
length of high quality
(start - end)
333 (309 - 641)642 (79 - 720)
definitionCHROMAT_FILE: MSMg01no499_n15.b1 PHD_FILE: MSMg01no499_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:20 2005CHROMAT_FILE: MSMg01no499_n15.g1 PHD_FILE: MSMg01no499_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCATTATAGGTCGAAAATAGCGCGGAATCTCCCTTTGGTTCGAAAAA
AGGGGAAACCCTTCCCATTGCTCCATACAACTTAGAGCCCCCCAGGCCCC
ACCAAGGAGTCAGGGTTACAGACACCCATTTCACCACTCCAGCAATATAG
TCCTTTCACGAGAGTTGTGGACATTTCTCGTTCTTCTTCCATCAACCTAG
AGCCCCCTCTCCACGGACTGAGGGTCGAGGACTCCCGTAGCGTCCTTGTG
TCTATGAAGAGTCCCCTCCCTATAGTGATCATCTTTACACTGGGGAAGGG
GAATAGTGGGTTTGGTGGCCCTGGCCCTGCGTGAAACCCCGGCTGACCTT
GGCCTTTGCTCACTGGGCTTGTGGCTCTGTACCCCGCGTGTGTCCATCTC
GGGTCTGAGGAACCTTGCCCCAGTGCCCGCCCAGTCTTCGGGTGTCTGTC
CCCAGTGCACCTCTCAACTGTGTCTGTTCTTTTCTCTAACCCCAAATCTG
TCCTCTGAGGCTCTTTGAGGTTGCTTTAAGTAAGTATGGTTACTGGGTTG
CAACAGATTCAGACATCTGAGCAGTTTAAACCCAAAGCCAGGGGTATCCT
CTTCGACGGAGGACACTTCTTGGAGAATCGACCCCTTGTGGCTGCTATGT
TTATAATTCTCTACTTCCAGATGTCTAGAGGCAAAGTCTGCGTACCTTTG
GCCCN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCCAATTTCTCTTTTTTAACCACT
CCATGCAAATGTACTTATCTTCATAATAAGGAAGAACATGTCTTCCTTGT
ATATTTAAAGTTATAAAACTAGATACTGTTATAGGACAGAAGGTAATTGG
GTTCATAGGAAGTGATGTATAATAGGGAGGAACATGCTCATGGATTTGGA
ACCAGTTACGACTATGATGTGTCCTGGTTATTGAAAATTAATATCAGAAT
GACATAGTTGAATGTCTTTATGAATTTGTCTTGTGGGTGACACTGATGCT
AAAATGCCTCCTGTATTTTAGTCTATAGAGAAAAACATAGAAAAAAGAAA
AAATGGGGTACATCCAGCAAACAGGTCTGGAGGCCATTAAATATTCCCAG
AGGAAAAGTTTCAAACAGTTGTTTAAAGTGTTTTACCAGGTGGCATGAAA
GATATACTTTCAAATAAAATTGGTGTGAAATAGGTGAGTGTTGGAGACCA
TATCGTGAGAAAGTAAGCCTTTTGTAGTTTCCCACCTTAACAAACCAAAT
GGCCTTGTGTTAAGGAGCTGGTCGCCTCCTCCTCCCTATTCCCTTCCTGG
CACCAAAGATCCTAAAAAGTTGAATTATAGTTCCCTCCTGACTCCCAAGA
CTTCTAAGGACATGAGTTATTCGCTGAGCCCAGCTTGACCCCAANGCTGT
TAATGAGGAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_n15.b1 MSMg01no499_n15.b1 CHROMAT_FILE:
MSMg01no499_n15.b1 PHD_FILE: MSMg01no499_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:20 2005
         (333 letters)



>mm_chr8_3278083_3278815
          Length = 733

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtttggtggccctggccctgcgtgaaaccccggctgaccttggcctttgctcactgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggtttggtggccctggccctgcgtgaaaccccggctgaccttggcctttgctcactgggc 474

                                                                       
Query: 61  ttgtggctctgtaccccgcgtgtgtccatctcgggtctgaggaaccttgccccagtgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttgtggctctgtaccccgcgtgtgtccatctcgggtctgaggaaccttgccccagtgccc 414

                                                                       
Query: 121 gcccagtcttcgggtgtctgtccccagtgcacctctcaactgtgtctgttcttttctcta 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcccaggcttcgggtgtctgtccccagtgcacctctcaactgtgtctgttcttttctcta 354

                                                                       
Query: 181 accccaaatctgtcctctgaggctctttgaggttgctttaagtaagtatggttactgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accccaaatctgtcctctgaggctctttgaggttgctttaagtaagtatggttactgggt 294

                                                                       
Query: 241 tgcaacagattcagacatctgagcagtttaaacccaaagccaggggtatcctcttcgacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgcaacagattcagacatctgagcagtttaaacccaaagccaggggtatcctcttcgacg 234

                                            
Query: 301 gaggacacttcttggagaatcgaccccttgtgg 333
           |||||||||| ||||||||||||||||||||||
Sbjct: 233 gaggacacttgttggagaatcgaccccttgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)