BAC Information

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BAC

Clone NameMSMg01-499P19
Chromosome8 (Build37)
Map Location 77,712,460 - 77,712,929
singlet/doubletsinglet
Overlap genenone
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5
Downstream geneRasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499P19.T7 (MSMg01no499_p19.b1)MSMg01-499P19.TJ (MSMg01no499_p19.g1)
ACCAG575937AG575938
length692736
length of high quality
(start - end)
330 (306 - 635)470 (74 - 543)
definitionCHROMAT_FILE: MSMg01no499_p19.b1 PHD_FILE: MSMg01no499_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:32 2005CHROMAT_FILE: MSMg01no499_p19.g1 PHD_FILE: MSMg01no499_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACACACAGGTCGNAAACTCCGCGGATTCCTCAGAGTTTTCCTGTCTCTG
TGATCCTGTAATTCTGGAATCTTTTGATCCTGAGATACTGGGTGTGTCAA
AGCTCCTGGGAGTCAAGCTGCCTCTGGAACCCTGAGATCCTGGTATGACC
AAGCTCTTGGGATCCTGTGATTCTGTGATCCTGGGTGTGTTAGAACACCT
GGGAGTGGAGTTTCCTCTGGGTGTTGTGGGACTGGCTGCAAAGTTAGTGC
CCAAGGTCTGTTCAGGCCACTGGCCCAGACCAGAAGGAACCTGTGCTCTT
TATTGGGGTGGAGTTCCTGCATGCTTGGGTCCCACTGGTCCCAGTTACTC
CCTGTGTTGTGGCAGATGTTGTATCCTCCTCACCTCTGATCCTATGATCC
TGGGAGTGTTAGAGTCCCTGGGAGTGGAGCTTCCTCAGGGCATTTGGGAC
TGGCTGTGGAATTTGCACCCAGACTGGAAGGAACCTGTGCCTTGGAGGCT
TTTTAAATCAGCAATTTTAGAATTAAACCATAGTTTCTCACTCTGAACCT
GGCTACCATAATAAAATATCTTATCAGTCAATGCATATTTATGGAGCACC
TATGATGCACTCAGCGTTTTAGTAGAGCTTATAAAACATGAAAGGTGGAG
AACAAAAGGTTTCAGACATCATTCCTCACCTTATGTGGGTTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTAGCCATAAGAAAAGAATGAAGTT
CAAGTTCTATCATTCAGGAAATAGATGGAACAGGAGATGGGTGTACTAGC
CAACCAAGTCGGTCCTACAGAGACAATTATGACGCTTTCCTTTATTAATG
AGTCCTTGCCATTATAGATATGCTAAGGCACATCTGTACTGATGCCATGC
AAGTAGAAATGAAACTGTCTGAGGAACAGAGAGGACTTGAGGGAGGGTAA
AAAGGGGAGTGGTGAGGTATGGAGGATATATAGTAAAAATACATTATATA
TTAGCACAAACTGGACTTGTGCAGTCCCAAAAAATAATAAATTGGAGCTG
GGTGGTGGCTGTGTACACCTTTAACCTAAGCTCTAGGGAGGCAGTGGTTG
GCAAATCTCTGAATTCGAAGCCAGCCTTGTCTACAAAGGGAGTTCCAGGA
GTACCAAGGAGAAACCATGTCTTGAACATTTTTGTTTGTTTTATTCTTTC
AAGATAGGGCTTCCTTGTGTAGCCCTGGTTTGCCTGGAACTTCCTCTGTA
GACCAGGTTGTTCTTGAACTCAAAGAACTATCTGTCCCCGTTATCATGTT
TGCGTTTTTATTCTTTCACTTCCGTTCCCTTCTTCTCTTTCTTTTCTTCT
TTATTTTCCCTTGTTTCCTCCTTCTTTTCCATACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_p19.g1 MSMg01no499_p19.g1 CHROMAT_FILE:
MSMg01no499_p19.g1 PHD_FILE: MSMg01no499_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:32 2005
         (470 letters)



>mm_chr8_77712260_77713129
          Length = 870

 Score =  886 bits (458), Expect = 0.0
 Identities = 467/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttagccataagaaaagaatgaagttcaagttctatcattcaggaaatagatggaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttagccataagaaaagaatgaagttcaagttctatcattcaggaaatagatggaacag 260

                                                                       
Query: 61  gagatgggtgtactagccaaccaagtcggtcctacagagacaattatgacgctttccttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gagatgggtgtactagccaaccaagtcggtcctacagagacaattatgacgctttcctct 320

                                                                       
Query: 121 attaatgagtccttgccattatagatatgctaaggcacatctgtactgatgccatgcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaatgagtccttgccattatagatatgctaaggcacatctgtactgatgccatgcaag 380

                                                                       
Query: 181 tagaaatgaaactgtctgaggaacagagaggacttgagggagggtaaaaaggggagtggt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tagaaatgaaactgtctgaggaacagagaggacttgagggagtgtaaaaaggggagtggt 440

                                                                       
Query: 241 gaggtatggaggatatatagtaaaaatacattatatattagcacaaactggacttgtgca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtatggaggaaatatagtaaaaatacattatatattagcacaaactggacttgtgca 500

                                                                       
Query: 301 gtcccaaaaaataataaattggagctgggtggtggctgtgtacacctttaacctaagctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcccaaaaaataataaattggagctgggtggtggctgtgtacacctttaacctaagctc 560

                                                                       
Query: 361 tagggaggcagtggttggcaaatctctgaattcgaagccagccttgtctacaaagggagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagggaggcagtggttggcaaatctctgaattcgaagccagccttgtctacaaagggagt 620

                                                             
Query: 421 tccaggagtaccaaggagaaaccatgtcttgaacatttttgtttgtttta 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaggagtaccaaggagaaaccatgtcttgaacatttttgtttgtttta 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)