BAC Information

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BAC

Clone NameMSMg01-500E22
Chromosome8 (Build37)
Map Location 77,102,771 - 77,103,252
singlet/doubletsinglet
Overlap genenone
Upstream geneCrry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500E22.T7 (MSMg01no500_e22.b1)MSMg01-500E22.TJ (MSMg01no500_e22.g1)
ACCAG576180AG576181
length695678
length of high quality
(start - end)
608 (37 - 644)482 (58 - 539)
definitionCHROMAT_FILE: MSMg01no500_e22.b1 PHD_FILE: MSMg01no500_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:55 2005CHROMAT_FILE: MSMg01no500_e22.g1 PHD_FILE: MSMg01no500_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTTAGCACTGAGCCCTACTTTTTAATGGGGTTATTTGATTTTCTTGAGTC
CACCTTCTTGATTCTTTATATATATTAGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCAAATCTGTTGGTGGCCTTTTTGTCTTAT
TGATGGTGTCTTTTGATTACAGAAGCTTTGCAGTTTCATGAGGTTCCCTT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGTTGTTCTATTCAGGAAT
TTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCCACCTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGAATGCATCAATTCGAATTCTTCTACAT
GATAACCACCAGTTGTGCCAGGACCATTTGTTGAAAATGCTGTCTTTCTT
CCACTAGATGGTTTGAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCTTTGGTCTACTTGTCTG
TCACTATACCAGTACCAGGCAGTTTTTATCACTACTGCTCTGTAGTAAAG
CTTTAGGTCAGGCATGGTGATCCCACCAGAGGTTCTTTTATCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGATATGATGTTTACAATCTGCCACAGTTCAAGGGTCCCAC
AAAAGTCACAGGTATCACTAGCTTTTGGCATCAGAAAGCACCAGGATCCC
ATATATGATACCCTAGCTAATATTTGCATGACCTTGGGGAGTTTAATGTT
TTGGGGTATAAGCTTGTCTTTAAAATGGAGGTTAGTGAACCATTCAACTA
GGATTGTGAGATAATAGATTGACTTACAAAGCATATGTCTGATAGCTTCA
TGTAGGTATTAGCATTTCTATTTTTCTGGTGAAGAAACAAAATTGTGTGG
GAATGACTAATTCAACACAAGGAGCTGGTAATGATAGAGTGTCATCAGTG
TGGGATCCTCCATGAAGATGTTCTTCAGTTCTGGAGACATAATAGGCCTT
ACAAGTTCTACACTGGAATGTAAACAAAATAGAGGCAGACTTTAATACAC
AGGTTAAAATTCTGGCATCTGTCCAGCCTGATTTAATGTAGGCATCACTG
TTTTGTTTTCTTCCTCCATTAATTTATTTGCTTATTTGTTTTGCATCCCA
AATATTGCCTCTCCTCCTGGTCTCTTCACAAAGTCCCTTTTCTTACACCC
ATCCTCTTCTCATCTGAGAGGGTGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_e22.g1 MSMg01no500_e22.g1 CHROMAT_FILE:
MSMg01no500_e22.g1 PHD_FILE: MSMg01no500_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:55 2005
         (482 letters)



>mm_chr8_77102571_77103452
          Length = 882

 Score =  924 bits (478), Expect = 0.0
 Identities = 481/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatatgatgtttacaatctgccacagttcaagggtcccacaaaagtcacaggtatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttgatatgatgtttacaatctgccacagttcaagggtcccacaaaagtcacaggtatca 623

                                                                       
Query: 61  ctagcttttggcatcagaaagcaccaggatcccatatatgataccctagctaatatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctagcttttggcatcagaaagcaccaggatcccatatatgataccctagctaatatttgc 563

                                                                       
Query: 121 atgaccttggggagtttaatgttttggggtataagcttgtctttaaaatggaggttagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgaccttggggagtttaatgttttggggtataagcttgtctttaaaatggaggttagtg 503

                                                                       
Query: 181 aaccattcaactaggattgtgagataatagattgacttacaaagcatatgtctgatagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaccattcaactaggattgtgagataatagattgacttacaaagcatatgtctgatagct 443

                                                                       
Query: 241 tcatgtaggtattagcatttctatttttctggtgaagaaacaaaattgtgtgggaatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcatgtaggtattagcatttctatttttctggtgaagaaacaaaattgtgtgggaatgac 383

                                                                       
Query: 301 taattcaacacaaggagctggtaatgatagagtgtcatcagtgtgggatcctccatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taattcaacacaaggagctggtaatgatagagtgtcatcagtgtgggatcctccatgaag 323

                                                                       
Query: 361 atgttcttcagttctggagacataataggccttacaagttctacactggaatgtaaacaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 322 atgttcttcagttctggagacataataggccttacaagttctacactggaatgtaaacga 263

                                                                       
Query: 421 aatagaggcagactttaatacacaggttaaaattctggcatctgtccagcctgatttaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatagaggcagactttaatacacaggttaaaattctggcatctgtccagcctgatttaat 203

             
Query: 481 gt 482
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)