BAC Information

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BAC

Clone NameMSMg01-500H08
Chromosome8 (Build37)
Map Location 66,706,259 - 66,706,470
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock3, LOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500H08.T7 (MSMg01no500_h08.b1)MSMg01-500H08.TJ (MSMg01no500_h08.g1)
ACCAG576293AG576294
length716653
length of high quality
(start - end)
211 (373 - 583)239 (49 - 287)
definitionCHROMAT_FILE: MSMg01no500_h08.b1 PHD_FILE: MSMg01no500_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:06 2005CHROMAT_FILE: MSMg01no500_h08.g1 PHD_FILE: MSMg01no500_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTCATAATTGCGGCGCTAAACGACTCACACATTCCGAATCCGCGG
NGAANNCNNNGTTTTGCCANGAGGCGGGGGCNNGAAAACAGCNNCAGGGA
AGCAGCAGCCCCCAGATTTTACCGAAAGCAAAGGAGAGANNGGCGAACAG
GCGCCGGCACCAGCTTCAGCTGGGACCAAGCAGGGGACTCTGAATTTTCT
CCATTAATAGTCATAATCACTTGAAGATATTAGGCTCTAATACTCATTTT
TTTTTTTAAAGACAATATATGACTTTTGAATCTTTCATAATGTCCATTAA
TGGGAGGGGGCAACTTTCTGTTTTTANANCCAGCGGACTACGCACAAAGA
ACTCTGGGATTATCTGTTCCATAAAATGGAGTTGTTGGTACTTCTTGTCA
CCTAGATTTATGTTCTGGACATCCTATCATAGAATCATCAGAGAAAAGAG
AATCACTCTTTCCTCAGTAGAAATGTGACCCATATCCACATCATTGATTC
CTATCAGCAGATGGGACCACCACAGTATTGATAAGTGAGGTAAGCTGCAC
ACTTGACTGATAGAATACTGGCAGTCAAGTTGTAATGTTGCAGCCATGAC
ATTTGCTGAAAGGGTGATAAGATGTTTCACAACTTATGTTTTGCCTTTAA
AACTAGAACACATTCAAACCTTAAGTGTCTTATGTCAGACACATCAGGAT
GGGTATAACATAAAGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
ACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGAGGATCACTCCTCCATTGTTGGTGGGAGTGCA
GGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCTTAAAACTG
GACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATGTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGG
ACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCA
CACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATAC
CCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_h08.b1 MSMg01no500_h08.b1 CHROMAT_FILE:
MSMg01no500_h08.b1 PHD_FILE: MSMg01no500_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:06 2005
         (211 letters)



>mm_chr8_66706059_66706670
          Length = 612

 Score =  366 bits (189), Expect = e-106
 Identities = 207/213 (97%), Gaps = 3/213 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatggagttgttggtacttcttgtcacctagatttatgttctggacatcctatcatag 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 201 aaaatggagttgttggtacttcttgttacctagatttatgttctggacattctatcatag 260

                                                                       
Query: 61  aatcatcagagaaaag-agaatcactctttcctcagtagaaatgtgacccatatccacat 119
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatcagagaaaagaag-atcactctttcctcagtagaaatgtgacccatatccacat 319

                                                                       
Query: 120 cattgattcc-tatcagcagatgggaccaccacagtattgataagtgaggtaagctgcac 178
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cattgatttcgtatcagcagatgggaccaccacagtattgataagtgaggtaagctgcac 379

                                            
Query: 179 acttgactgatagaatactggcagtcaagttgt 211
           |||||||||||||||||||||||||||||||||
Sbjct: 380 acttgactgatagaatactggcagtcaagttgt 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 612
Length adjustment: 9
Effective length of query: 202
Effective length of database: 603
Effective search space:   121806
Effective search space used:   121806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)