Query= MSMg01no500_i23.b1 MSMg01no500_i23.b1 CHROMAT_FILE:
MSMg01no500_i23.b1 PHD_FILE: MSMg01no500_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:13 2005
(594 letters)
>mm_chr8_118929197_118930191
Length = 995
Score = 963 bits (498), Expect = 0.0
Identities = 572/608 (94%), Gaps = 20/608 (3%)
Strand = Plus / Minus
Query: 5 ggaattcctgagccttc---aacatagctgtatcactttctcagttctttaacaccctta 61
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 763 ggaattcctgagcc--cccaaacacagctgtatcactttctcagttctttaacaccctta 706
Query: 62 cttttgccaagctaggaggtttggggtatagtttctgcccctcccactgtcccaggatcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttttgccaagctaggaggtttggggtatagtttctgcccctcccactgtcccaggatcc 646
Query: 122 tgaactggtccccaaacaacctcacgtttccacttttagtttttctcatccaacccttct 181
|||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 645 tgaactggtcttcaaacaacctcatgtttccacttttagcttttctcatccaacccttct 586
Query: 182 ccaaacatatccttagactagatgtgtagtttgggcaaacctcaccctaaggtcacacat 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 585 ccaagcatatccttagactagatgtgtagtttgggcaaacctcaccctaaggttacataa 526
Query: 242 tttctagtagcaagacatagccctggtatagtatataccacctatagccaaccttgatgg 301
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 525 tttctagtagcaagacatagccccggtatagtatataccacctataggcaaccttgatgg 466
Query: 302 gactcagtattctcaatgcaagaaggctctttagaatttcaaagaagtaggcatcttcca 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 465 gactcagtattctcaatgcaagaaagctctttagaatttcaaagaagtaggcatcttcca 406
Query: 362 aagtcccttgccacctgcccttctggattctattgacgatgccaaatatgaagctcaatt 421
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaatcccttgccacctgcccttctggattctattgacgatgccaaatatgaagctcaatt 346
Query: 422 tgaacacagtctagttccccttttctttttgttcaatgggagtgaccaggacggaggaac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgaacacagtctagttccccttttctttttgttcaatgggagtgaccaggacggaggaac 286
Query: 482 tttctttaaccagtgctccgttaagctatggtgatacaaccttagcaggacctaccagta 541
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 285 tttctttaaccagtgctccgttaagctatgctgatacaaccttagcaggacctaccagta 226
Query: 542 agaaccagtctaacaaat---------------ccatgtggtcctgtgctatggatttat 586
|||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 225 agaaccagtctaacaaatccacattccataggaccatgtggttctgtgctatggatttac 166
Query: 587 aactcagc 594
||||||||
Sbjct: 165 aactcagc 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space: 575240
Effective search space used: 575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_i23.g1 MSMg01no500_i23.g1 CHROMAT_FILE:
MSMg01no500_i23.g1 PHD_FILE: MSMg01no500_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:13 2005
(476 letters)
>mm_chr8_118727121_118727996
Length = 876
Score = 920 bits (476), Expect = 0.0
Identities = 476/476 (100%)
Strand = Plus / Plus
Query: 1 ggaatgaatatgaatataatcattttacacaaatgttctccaaggagggagcagaaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaatgaatatgaatataatcattttacacaaatgttctccaaggagggagcagaaagca 260
Query: 61 tgaaccaggcagactccccaccgcttaattcataatggatcagccgattcattccttatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaccaggcagactccccaccgcttaattcataatggatcagccgattcattccttatt 320
Query: 121 aatttaatggagcacaagtaagcatcgtagcagcttgagtttaggagtgtttcacaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttaatggagcacaagtaagcatcgtagcagcttgagtttaggagtgtttcacaaatg 380
Query: 181 gggctttttgtctgtaatcgcttaatcctgcaggctaggcctcataaattgaataaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctttttgtctgtaatcgcttaatcctgcaggctaggcctcataaattgaataaaaga 440
Query: 241 gggaactgggttttaattaagtccaaggaatgaggctgtgtccaagacacaaccactgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaactgggttttaattaagtccaaggaatgaggctgtgtccaagacacaaccactgct 500
Query: 301 gacaagcacaggggctggagtgtgtttggttaataccccctgctaatggtaccagggctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaagcacaggggctggagtgtgtttggttaataccccctgctaatggtaccagggctc 560
Query: 361 agggaacccctggccagaaccttttgatgtcacactggaagggaaatcctttccccttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaacccctggccagaaccttttgatgtcacactggaagggaaatcctttccccttca 620
Query: 421 tcagctggctgcatagagggcagagagagaagagaacagattagtgtgagctcttg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagctggctgcatagagggcagagagagaagagaacagattagtgtgagctcttg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
