Query= MSMg01no501_g02.b1 MSMg01no501_g02.b1 CHROMAT_FILE:
MSMg01no501_g02.b1 PHD_FILE: MSMg01no501_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:12 2005
(690 letters)
>mm_chr8_115289006_115290095
Length = 1090
Score = 1127 bits (583), Expect = 0.0
Identities = 660/687 (96%), Gaps = 6/687 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagtctctacctcctaataagactgttatatggcctgaacttctcaatcaggc 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtctctaaatcctaataagactgttatatggcctgaacttctcaatcaggc 264
Query: 65 tctgaaagcatgaagctaaatcctaaaatgttggggtagccaagaccctgcagggaatat 124
||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||
Sbjct: 265 tctgaaagcatgaagctaaatcctaaaatgtcggggtagctaagaccctgcagtgcatat 324
Query: 125 attgaagcgattggtgttggggttttactaaggaagctctgtagcatatcttttaggcat 184
||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 attgaaggggttgatgttggggttttaccaaggaagctctgtagcatatcttttaggcat 384
Query: 185 accacatatgtttatacatttataaaagtaggcaaataaaaatatactctaaatttaggt 244
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 accacatatggttatacatttataaaagtaggcaaataaaaatatactctcaatttaggt 444
Query: 245 agtgaagacctacctagagaatcttagagagacaaatatttatttatgatatgcatgaaa 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgaagacctacctagacaatcttagagagacaaatatttatttatgatatgcatgaaa 504
Query: 305 agatgtggaattctttaatgtcattagaggagttgggagatggtgctgtgagtaagggtg 364
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 atatgtggaattctttaatgtcattagaggagttgggagatggtgctgtgagtaagagtg 564
Query: 365 cttata-aatcaatgaggaggtaagtttgcgtccccagcagctaaataaaaagctaggat 423
|||||| || ||||||||||||||||||| |||||||||||| ||||||||||||||| |
Sbjct: 565 cttatacaa-caatgaggaggtaagtttgagtccccagcagccaaataaaaagctagggt 623
Query: 424 ggcagtgcacatccctttgaccaagttctaggaaaacgtagagctaggagcttcacctga 483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 agcagtgcacatccctttgaccaagttctaggaaat-gtagagctaggagcttcacctga 682
Query: 484 gcttgctggccgacaaccagaaattggtctaaatgtaagtatccagcctgccttctttcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gcttgctggccgacaaccagaaattggtctaaatgtaagtatccagcctgccttctttcc 742
Query: 544 tcctgtgtccaagttgaaaaaaaggattcttttcttggatggtagaatagtattctttta 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 743 tcctgtgtccaagttgaaaaaaaggattcttttcttggatggtagaatagtattct---a 799
Query: 604 actcctgagtaagatttgtgtcctttttaatataaccatgacaaaacaatgtgaacaatt 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 800 actcctgagtaagatttgtgtcccttttaatataaccatgacaaaacaatgtgaacaatt 859
Query: 664 taagagcgtttggggggcattttaaaa 690
|||||||||||||||||||||||||||
Sbjct: 860 taagagcgtttggggggcattttaaaa 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_g02.g1 MSMg01no501_g02.g1 CHROMAT_FILE:
MSMg01no501_g02.g1 PHD_FILE: MSMg01no501_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:12 2005
(656 letters)
>mm_chr8_115465113_115466168
Length = 1056
Score = 1176 bits (608), Expect = 0.0
Identities = 652/686 (95%), Gaps = 30/686 (4%)
Strand = Plus / Minus
Query: 1 caatatttaaccaatgaaggagaaagtaaaagatcagccttgggctagagagatggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 caatatttaaccaatgaaggagaaagtaaaagatcagccttgggctagagagatggcttg 989
Query: 61 caggtaagaatacttacagcacaatcatggagactttgaggtcagatgccagcctgtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 caggtaagaatacttacagcacaatcatggagactttgaggtcagatgccagcctgtagg 929
Query: 121 taaaaagctgggtgtgactttctctacctgtaactagaacaatattagaagaaaatatag 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 taaaaagctgggtgtgaatttctctacctgtaactagaacaatattagaagaaaatatag 869
Query: 181 gaagatggcagcctggctccagtttcagtttcaaataactaaggcaaaagcaatagggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaagatggcagcctggctccagtttcagtttcaaataactaaggcaaaagcaatagggtg 809
Query: 241 ggatactggatgctggatgtccccctctaacctccacaagcaagctcacaaccaggtatt 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 808 ggatactggatgctggatgtccccctctgacctccacaagcaagctcacaaccaggtatt 749
Query: 301 tcat------------------------------acacacacacacacacatcacagtca 330
|||| ||||||||||||||||||||||| ||
Sbjct: 748 tcatacacacacacacacacacacacacacacacacacacacacacacacatcacagcca 689
Query: 331 tacatatatgcatacctatatgtatacattttttatttaaatcattctttatagttgcct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tacatatatgcatacctatatgtatacattttttatttaaatcattctttatagttgcct 629
Query: 391 ccctttttcttcgatgatccaggtaagtagaacaaccttaaagttgacatcagtgttctt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccctttttcttcgatgatccaggtaagtagaacaaccttaaagttgacatcagtgttctt 569
Query: 451 gccatttgaatgtttatttgtgtgcatatatgtgcctctttgtccatgtgagcactacat 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 568 gccatttgaatgtttatttgtgtgcatatatgtgcctctttgtccatgtgagcactaaat 509
Query: 511 gcaggtatccacagaggccaggagagagtgttgaaatccctggaactagaattacaggca 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcaggtatccacagaggccaggagagagtgttgaaatccctggaactagaattacaggca 449
Query: 571 ctcttggtcatccattacaggtgctagggaagaaactctggccctcagcaagaacagttt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctcttggtcatccattacaggtgctagggaagaaactctggccctcagcaagaacagttt 389
Query: 631 aagctcttaaatataaatatggtaaa 656
||||||||||||||||||||||||||
Sbjct: 388 aagctcttaaatataaatatggtaaa 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
