BAC Information

Click to search

BAC

Clone NameMSMg01-501I13
Chromosome8 (Build37)
Map Location 10,883,943 - 10,957,777
singlet/doubletdoublet
Overlap geneLOC100040507, LOC665306
Upstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008, LOC384782
Downstream geneIrs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501I13.T7 (MSMg01no501_i13.b1)MSMg01-501I13.TJ (MSMg01no501_i13.g1)
ACCAG577106AG577107
length679702
length of high quality
(start - end)		320 (301 - 620)644 (59 - 702)
definitionCHROMAT_FILE: MSMg01no501_i13.b1 PHD_FILE: MSMg01no501_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:23 2005CHROMAT_FILE: MSMg01no501_i13.g1 PHD_FILE: MSMg01no501_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,957,459 - 10,957,777)(10,883,943 - 10,884,586)
sequence
GACTCACTTTTCAGAGAGGATCCGCGGAATTCTCCGATTGCAGAAGAGGA
ACTGCCTTCCATTCGCTCTACCTCGTGTGTCGATAAAATAACCCATTTAT
GGTTTTAAAATTCAGATTTCATCTATACAAACACTGCTCTGTGGCCATCT
AAAAGTGTTCTAAGGACAAAGCCGCTGCTTTCTAGCTATACATAGGCACT
CATTGTTTTATTTGTTTTTCCAAGCTGATGGAAATTGTTTCCCAGATGAC
GTGGGAGCTGGTGTACTGCAGAATGGAGCAGGCCCTCTAGGAGTCGTGTC
CTGGCTCACAGGATGCAGAGCTTTGAATGGCCGCTGTAGACTGGTGGCTG
TTCTGTCTACCCTGCAGTAGCCTGGGCTGAATCTCAAACATCCCTTCTTG
TCTTCTGTCCAGGCCTGCTAATCTCTCCCAAAGTGTTAGCTGATAATAGA
CGTGTGAGGACTCCCAGGAGGATTGGATTTCCAAAAGAGCCTCTGAGATA
GAAAAAAAAATGCTCCCATGAAAGGAGCTGGAGGAGGGAGGGAGGTTGTT
ATCTTTTAACCTGCTCACATGCTGAGTTTCAGTCCATTTCATCCCCATCT
AGTTAGAGCGCCCCCCCCCAAGCCTGCAGCTGTGGACTCTGTTGCTCCCT
CCTTCATCCTCAGGGCTCTCAGTACTATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAGGCAGTCAGTGGAGAATGCTTGTATGTCTGCACCAAATGG
TTGGGATAGGGAATGGTCATCCTGTGTCTTCAGTGACATGATGACAAGGT
GTTTCAGCATTCCCCATTGAACTGTCACATGTTTTCCAAGGTTTCTGCAA
GAATACGGGGTACTATAGGCAATGGCAGTGCAATGATGAACTGCATGGTC
AACCAGGGCCATCACTATCACCATCACCAACTGCAAGAGTTCATGGCTTC
TGCATGGTCTTATGACCATCTTCAGGATGGTCTCATGATCATCTGCAGGG
TAGTCTCATGGCATTTGCAGGGTGGTCTCATGACATTCTGCAGAGATTCT
TGGCTATATGCAGGGTCTCACAACCATTTGCAAGGCCTCATTGCCATCTC
CACAGTCTGATGACCTTTTGCAGAGTCTCATGGTTGTCTGCAGGGTCTTA
TGACTTCCTACAGGGTCCCATGGCCATCTGCAGAGTCTCATCACTGTCTT
CAGGGTCCCAAGGTCTTAGGGTTGTTGGTTGGTTGGTTCCACAGTCATCT
GAAGTATCTCAAGACTATCTACTGGTCCCACAGCTGTATTGAGAGTGCCA
GAGTTATCTGTGGATCTCATCACAGTCTTCAGGTCTCGCATCTTCTGCAG
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_i13.b1 MSMg01no501_i13.b1 CHROMAT_FILE:
MSMg01no501_i13.b1 PHD_FILE: MSMg01no501_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:23 2005
         (320 letters)



>mm_chr8_10957259_10957978
          Length = 720

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggctcacaggatgcagagctttgaatggccgctgtagactggtggctgttctgtctac 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 519 ctggctcacaggatgcagagctttgaaaggccgctgtagactggtggctgttctgtctac 460

                                                                       
Query: 61  cctgcagtagcctgggctgaatctcaaacatcccttcttgtcttctgtccaggcctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cctgcagtagcctgggctgaatctcaaacatcccttcttgtcttctgtccaggcctgcta 400

                                                                       
Query: 121 atctctcccaaagtgttagctgataatagacgtgtgaggactcccaggaggattggattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atctctcccaaagtgttagctgataatagacgtgtgaggactcccaggaggattggattt 340

                                                                       
Query: 181 ccaaaagagcctctgagatagaaaaaaaaatgctcccatgaaaggagctggaggagggag 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccaaaagggcctctgagatagaaaaaaaaatgctcccatgaaaggagctggaggagggag 280

                                                                       
Query: 241 ggaggttgttatcttttaacctgctcacatgctgagtttcagtccatttcatccccatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggaggttgttatcttttaacctgctcacatgctgagtttcagtccatttcatccccatct 220

                              
Query: 301 agttagagcgccccccccc 319
           |||||||||||||||||||
Sbjct: 219 agttagagcgccccccccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_i13.g1 MSMg01no501_i13.g1 CHROMAT_FILE:
MSMg01no501_i13.g1 PHD_FILE: MSMg01no501_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:23 2005
         (644 letters)



>mm_chr8_10883743_10884786
          Length = 1044

 Score = 1145 bits (592), Expect = 0.0
 Identities = 631/644 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcagtcagtggagaatgcttgtatgtctgcaccaaatggttgggatagggaatggtc 60
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcaatcagtggagaatacttgtatgtctgcaccaaatggttgggatagggaatggtc 260

                                                                       
Query: 61  atcctgtgtcttcagtgacatgatgacaaggtgtttcagcattccccattgaactgtcac 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctgtgtcttcggtgacatgatgacaaggtgtttcagcattccccattgaactgtcac 320

                                                                       
Query: 121 atgttttccaaggtttctgcaagaatacggggtactataggcaatggcagtgcaatgatg 180
           ||||||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||
Sbjct: 321 atgttttccaaggtttctgcaagaataaggggtacgataggcaatgtccgtacaatgatg 380

                                                                       
Query: 181 aactgcatggtcaaccagggccatcactatcaccatcaccaactgcaagagttcatggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgcatggtcaaccagggccatcactatcaccatcaccaactgcaagagttcatggct 440

                                                                       
Query: 241 tctgcatggtcttatgaccatcttcaggatggtctcatgatcatctgcagggtagtctca 300
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tctgcatggtctcatgaccatcttcaggatggtctcatgatcgtctgcagggtagtctca 500

                                                                       
Query: 301 tggcatttgcagggtggtctcatgacattctgcagagattcttggctatatgcagggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcatttgcagggtggtctcatgacattctgcagagattcttggctatatgcagggtct 560

                                                                       
Query: 361 cacaaccatttgcaaggcctcattgccatctccacagtctgatgaccttttgcagagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaaccatttgcaaggcctcattgccatctccacagtctgatgaccttttgcagagtct 620

                                                                       
Query: 421 catggttgtctgcagggtcttatgacttcctacagggtcccatggccatctgcagagtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggttgtctgcagggtcttatgacttcctacagggtcccatggccatctgcagagtct 680

                                                                       
Query: 481 catcactgtcttcagggtcccaaggtcttagggttgttggttggttggttccacagtcat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 catcactgtcttcagggtcccaaggtcttagggttgttggttggttggttccacggtcat 740

                                                                       
Query: 541 ctgaagtatctcaagactatctactggtcccacagctgtattgagagtgccagagttatc 600
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 ctgaagtatctcaagactatctactggtcccacagctgtattgagagttccagagttatc 800

                                                       
Query: 601 tgtggatctcatcacagtcttcaggtctcgcatcttctgcagtg 644
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 tgtggatctcatcacagtcttcaggtctcacatcttctgcagtg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |