BAC Information

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BAC

Clone NameMSMg01-502C16
Chromosome8 (Build37)
Map Location 101,122,782 - 101,277,838
singlet/doubletdoublet
Overlap genenone
Upstream geneEG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502C16.T7 (MSMg01no502_c16.b1)MSMg01-502C16.TJ (MSMg01no502_c16.g1)
ACCAG577586AG577587
length669727
length of high quality
(start - end)
571 (18 - 588)647 (77 - 723)
definitionCHROMAT_FILE: MSMg01no502_c16.b1 PHD_FILE: MSMg01no502_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:07 2005CHROMAT_FILE: MSMg01no502_c16.g1 PHD_FILE: MSMg01no502_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,277,268 - 101,277,838)(101,122,782 - 101,123,428)
sequence
CTCCTTCTCCCTATTTCTGGTTACCCCAGTTTGAACCCCATATTCATGGC
AGTACCCCAAAGACAGAGCTAGAGTTTCTGATACATCTTTACTCACTCCT
CTGGCTAATGTGACTACATTGAATAACTCTCCTCTCCCTGTTTTTCACTA
TTGCTCAACGCTTTGGCTGCTATACTGGGGATGGTTGACCAGTACTACAA
TATTGCAGCTGTACCAGAAGGTTGCTGTATAACTTCTGATTTTTTTCGAA
CAAGTAATGAATAAGATGATAGTTAATTTACAGAAATGATTATTGCTATT
CTCTTACTAAACCAAAATATCTAATGAAAAGTCAACAGTGTAATAAAATA
CAGAACATAAAATGTTCTGAAATGGTTACTACTGGGATTGATTGAATTGG
CAAGAAAAGTAACCCTTGGCGACACTTGATATATTGTACCTGCACAGGTG
CTTTAGAGATATTGAACCAAATGCCCTGGTCTGTTTCTTGGTGAAGAGCA
CACTGCAGTATGTCTCTTATTTTTTTATATGTTTGTTTATTTGTTTATCT
ATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTCATNCCTT
CTCCCCCCCCTCTCATTTTCTTTTTTTCCTTTTCCTTCTTTCCTCGCTAT
TTATCGCCCCTTCTTTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGCAAAACAAAACACTTACC
CTATAATTACTGAGCAAAAGAAAGAGAAGGTGCTGAGGTCACACTATCTT
TTCAAAGGTATGCCTTCAATGACTTGAGCACATGTAATAACTCTTTACCT
AATGAAAGTGTACCTTTTCCTCTTTACCAAAAACATATATCTAAGGATCC
CTTTTGTGGGATACTACTCATCTAAACAATAAACACCCATGTATGTAATT
ATTTCACTTAAGACTTTTCCCACAGGAATTCTTCATAAGATTAAATCTAT
TCTTATTCAAACTTGTAATTATAATGCTCAGAGAAATTTCTTACTCTCTT
AGAGGAAGTGAAGCTTATTTCTTCTTCAGCTTGTACAATATTTCCTTTGA
ATAGAAACACTTCATCCTAGATGGAAGCTCGGTGAGACTAAGGATGTAAA
CAAAACTTAGAAGATTAAAGAATGTTTATACATCAAATCTGTACAGGGAG
CTCCACGGGGACACTCTTTCTTAAGTTGACATAAAAGAACTTTTCAGTTT
TTAATGCATTGAGCCCATGTCCTTACATATAATCAATCCTAAGAAATGTA
TTTGATTTTCCCAGGTGGACTTTGGAATGTGTTTTCTTCTTTGTTCTTCC
CATTATTTCTTTTAATTGAAAAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_c16.b1 MSMg01no502_c16.b1 CHROMAT_FILE:
MSMg01no502_c16.b1 PHD_FILE: MSMg01no502_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:07 2005
         (571 letters)



>mm_chr8_101277140_101278110
          Length = 971

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttaccccagtttgaaccccatattcatggcagtaccccaaagacagagctagagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tggttaccccagtttgaaccccatattcatggcagtaccccaaagacagagctagagttt 640

                                                                       
Query: 61  ctgatacatctttactcactcctctggctaatgtgactacattgaataactctcctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctgatacatctttactcactcctctggctaatgtgactacattgaataactctcctctcc 580

                                                                       
Query: 121 ctgtttttcactattgctcaacgctttggctgctatactggggatggttgaccagtacta 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctgtttttcactattgctcaacactttggctgctatactggggatggttgaccagtacta 520

                                                                       
Query: 181 caatattgcagctgtaccagaaggttgctgtataacttctgatttttttcgaacaagtaa 240
           ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 519 caatactgcagctgtaccagaaagttgctgtataacttctgatttttttcaaacaagtaa 460

                                                                       
Query: 241 tgaataagatgatagttaatttacagaaatgattattgctattctcttactaaaccaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgaataagatgatagttaatttacagaaatgattattgctattctcttactaaaccaaaa 400

                                                                       
Query: 301 tatctaatgaaaagtcaacagtgtaataaaatacagaacataaaatgttctgaaatggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tatctaatgaaaagtcaacagtgtaataaaatacagaacataaaatgttctgaaatggtt 340

                                                                       
Query: 361 actactgggattgattgaattggcaagaaaagtaacccttggcgacacttgatatattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 actactgggattgattgaattggcaagaaaagtaacccttggcgacacttgatatattgt 280

                                                                       
Query: 421 acctgcacaggtgctttagagatattgaaccaaatgccctggtctgtttcttggtgaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 acctgcacaggtgctttagagatattgaaccaaatgccctggtctgtttcttggtgaaga 220

                                                                       
Query: 481 gcacactgcagtatgtctcttatttttttatatgtttgtttatttgtttatctatttgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 219 gcacactgcagtatgtctcttatttttttatatgtttgtttatttgtttatctatgtgtg 160

                                          
Query: 541 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 571
           |||||||||||||||||||||||||||||||
Sbjct: 159 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_c16.g1 MSMg01no502_c16.g1 CHROMAT_FILE:
MSMg01no502_c16.g1 PHD_FILE: MSMg01no502_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:08 2005
         (647 letters)



>mm_chr8_101122582_101123628
          Length = 1047

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcagcaaaacaaaacacttaccctataattactgagcaaaagaaagagaaggtgctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagcaaaacaaaacacttaccctataattactgagcaaaagaaagagaaggtgctga 260

                                                                       
Query: 61  ggtcacactatcttttcaaaggtatgccttcaatgacttgagcacatgtaataactcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcacactatcttttcaaaggtatgccttcaatgacttgagcacatgtaataactcttt 320

                                                                       
Query: 121 acctaatgaaagtgtaccttttcctctttaccaaaaacatatatctaaggatcccttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctaatgaaagtgtaccttttcctctttaccaaaaacatatatctaaggatcccttttg 380

                                                                       
Query: 181 tgggatactactcatctaaacaataaacacccatgtatgtaattatttcacttaagactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggatactactcatctaaacaataaacacccatgtatgtaattatttcacttaagactt 440

                                                                       
Query: 241 ttcccacaggaattcttcataagattaaatctattcttattcaaacttgtaattataatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccacaggaattcttcataagattaaatctattcttattcaaacttgtaattataatg 500

                                                                       
Query: 301 ctcagagaaatttcttactctcttagaggaagtgaagcttatttcttcttcagcttgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcagagaaatttcttactctcttagaggaagtgaagcttatttcttcttcagcttgtac 560

                                                                       
Query: 361 aatatttcctttgaatagaaacacttcatcctagatggaagctcggtgagactaaggatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatatttcctttgaatagaaacacttcatcctagatggaagctcggtgagactaaggatg 620

                                                                       
Query: 421 taaacaaaacttagaagattaaagaatgtttatacatcaaatctgtacagggagctccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 taaacaaaacttagaagattaaagaatgtttatacatcaaatctgtacagggagctccag 680

                                                                       
Query: 481 ggggacactctttcttaagttgacataaaagaacttttcagtttttaatgcattgagccc 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggacactctttcttaagttgtcataaaagaacttttcagtttttaatgcattgagccc 740

                                                                       
Query: 541 atgtccttacatataatcaatcctaagaaatgtatttgattttcccaggtggactttgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtccttacatataatcaatcctaagaaatgtatttgattttcccaggtggactttgga 800

                                                          
Query: 601 atgtgttttcttctttgttcttcccattatttcttttaattgaaaag 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgtgttttcttctttgttcttcccattatttcttttaattgaaaag 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)