BAC Information

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BAC

Clone NameMSMg01-502E06
Chromosome8 (Build37)
Map Location 113,969,497 - 113,969,984
singlet/doubletsinglet
Overlap genenone
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
Downstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502E06.T7 (MSMg01no502_e06.b1)MSMg01-502E06.TJ (MSMg01no502_e06.g1)
ACCAG577661AG577662
length744705
length of high quality
(start - end)
534 (53 - 586)595 (56 - 650)
definitionCHROMAT_FILE: MSMg01no502_e06.b1 PHD_FILE: MSMg01no502_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:15 2005CHROMAT_FILE: MSMg01no502_e06.g1 PHD_FILE: MSMg01no502_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAGTATTAC
ACCAAAAAGAGAACAAATTGAGAAACAGGATTATAAGGTAAACATTTGGT
TGTTGTTTTGAGACAAGGTCTCTAGGTAGCCCTGGCTAGCCTGGAACTCT
CTATGTAGACTAGGCTGACCTTGAACTCAGAGAGAGCCTGTCTCTGCCTC
ATGGGTGCTGTGATTAAAAACACGCACTGCTGTGTCTGGAAAAGACTATA
AATTTTGAAAGATACATGAAGCCATGAGTAAAAGAGACTTGGGGTAGAAA
GAGAGTTGCCCAAGACTGGCCTATTTCTTTTTCTTTTGTGTGCATGAGTA
TTTTGCCTGCATGTTTGTCTGTGTACCATGTGTGTGCTTGGCACCTGTGA
GCCAGAAAGGGCATCAGATTCTCTGGAACTGGAGTTCCAGGTGTGAACTT
GATGCTTGTGCCAAAAATTGAACCTGGATCCTCTGTAAGAGCAAGAAGTG
CCTCCCCGCACCAACTTCTCTGGTTCTATAGGCTCTGTTTCTTAATAATA
CAGACTAAGTCATTTAACCCTTTAGAGCCTGACACCCTCACCCCCATTTA
ATAAAGGAGAAAATATACCTTTCTCTTTGGGAAGTTGGTATGTATGAAGA
GTCATATCCTATAGCTTACCCAACACTTTCGGCCTGGGGGTTGTTGAATA
CTTTGATGGTAATTGGAGATCTGTGATACTCTCCTCTATAAATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATCACCTTGGAGAGGTGTTTGAGCCAGATCAGCTGAGTTGAACCA
GCCAAACAGAGCTCAGAAAGAACTAGGAAGGGGTGAACTTATTCAGCAGG
CAGCCTCGGTGGCTGAAAACATTCTAGGCTTTGATTAGATTGTATGGAGG
CTAGAAGCTTCCAGGACTGGGCCTAGGTTAGCAGACGGTGGAGGCAGTGA
ACCTCAGAGGTGACAATTACTTCAAGAGAATAAAAGTTACATTTACAAGG
GCATCCAGGGCTGTGCGTGTGCATGTGTGTGCGTGCATGCGTGTGTGTGT
GTGCGCGTGTGTCAGTATGGCTGAACTGCTTTGAAGGATGAGTGTTTTCA
GTGGGAAAGAGTAGGCGAGCACGTGAAGGGCTTAGCCAAGGACAGGGAGA
AGGACATCACTGAAGGCACCTGCAGTCTCGCTTATCAGCACAACACAGGC
TGGAGCTGATAAACAGGGCTGGAGAGGTGCAAGAGCCAGAGCGCTGTGCC
AGGGAGGCTGGGCTTTATCTGTAGCCTGGAGTCTCGAGCTTTCCGCTGCT
AGGCTTTGCCCTTCTCCCTACCCACTTGGCCTTCANGCTTGGGACTCTGC
AGCCCACCTGCCTGTGCAGAGTGGTGCGAGTATCCAGTATCTGTTGCTTC
ATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_e06.g1 MSMg01no502_e06.g1 CHROMAT_FILE:
MSMg01no502_e06.g1 PHD_FILE: MSMg01no502_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:15 2005
         (595 letters)



>mm_chr8_113968990_113969984
          Length = 995

 Score =  772 bits (399), Expect = 0.0
 Identities = 457/496 (92%), Gaps = 34/496 (6%)
 Strand = Plus / Minus

                                                                       
Query: 126 ttgattagattgtatggaggctagaagcttccaggactgggcctaggttagcagacggtg 185
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 995 ttgattagattgtacggaggctagaagctttcaggactgggcctaggttagcagacggtg 936

                                                                       
Query: 186 gaggcagtgaacctcagaggtgacaattacttcaagagaataaaagttacatttacaagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gaggcagtgaacctcagaggtgacaattacttcaagagaataaaagttacatttacaagg 876

                                                                       
Query: 246 gcatccagggc------tgtgcgtgtgc------------------a--tgtgtgtgcgt 279
           |||||||||||      |||||||||||                  |  |||||||||||
Sbjct: 875 gcatccagggctgtgtatgtgcgtgtgcgcgtgcgcgcgcgcgcgtatgtgtgtgtgcgt 816

                                                                       
Query: 280 gcatgcgtgtgtgtgtgtgcgcgtgtgtcagtatggctgaactgctttgaaggatgagtg 339
           |  |||||||||||||      ||||||||||||||||||||||||||||||||||||||
Sbjct: 815 g--tgcgtgtgtgtgt------gtgtgtcagtatggctgaactgctttgaaggatgagtg 764

                                                                       
Query: 340 ttttcagtgggaaagagtaggcgagcacgtgaagggcttagccaaggacagggagaagga 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttttcagtgggaaagagtaggcgagcacgtgaagggcttagccaaggacagggagaagga 704

                                                                       
Query: 400 catcactgaaggcacctgcagtctcgcttatcagcacaacacaggctggagctgataaac 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 catcactgaaggcacctgcagtctcgcttatcagcacaacacaggctggagctgataaac 644

                                                                       
Query: 460 agggctggagaggtgcaagagccagagcgctgtgccagggaggctgggctttatctgtag 519
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agggctggagaggtgcaagaaccagagcgctgtgccagggaggctgggctttatctgtag 584

                                                                       
Query: 520 cctggagtctcgagctttccgctgctaggctttgcccttctccctacccacttggccttc 579
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cctggagtctcgagctttacgctgctaggctttgcccttctccctacccacttggccttc 524

                           
Query: 580 angcttgggactctgc 595
           | ||||||||||||||
Sbjct: 523 aggcttgggactctgc 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)