BAC Information

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BAC

Clone NameMSMg01-502P16
Chromosome8 (Build37)
Map Location 74,165,934 - 74,166,067
singlet/doubletsinglet
Overlap geneUnc13a
Upstream genePgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1
Downstream geneJak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P16.T7 (MSMg01no502_p16.b1)MSMg01-502P16.TJ (MSMg01no502_p16.g1)
ACCAG578204AG578205
length742682
length of high quality
(start - end)
275 (359 - 633)134 (402 - 535)
definitionCHROMAT_FILE: MSMg01no502_p16.b1 PHD_FILE: MSMg01no502_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:08 2005CHROMAT_FILE: MSMg01no502_p16.g1 PHD_FILE: MSMg01no502_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGTCAAACGACTCACTATTTCCTTACCCGGGCGGAANNCNNNGTTT
TCCTCTATCGGGGGGNNNNNAANAGGGNNANNGNANTNTCTGGAGTCCAG
CTTCTTGAGTTCTTTGTATATGTTGGATATTAGTCCCCTATCAGATTAGG
ATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCATTTTTGTCTTATTGA
AAGTGTCTTTTGCCTTACAAAAAAATTGCTTTGCAATTTTATGAGGTCCC
ATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTCCTCCTGTGCCCATATCTTCGAGGCTTTTCCTCACTTTCTCCTC
TATAAGCTTCAGAGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAG
ACTTGACCTTTGTACACGGAGATAAAAATAGATCAATGTGCATTCTTCTA
CATGCTAACCACCAGTTGTGCCCGCACCATTTGTTGAAAATGCTATTTTT
TTTCCACTAGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGG
TATGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGT
CTGTTGCTGTACCAGTACCATGCGGTTTTTTATCACAATTGTTTTGTAGT
ACAGCTTGAAATCAGGCACAGTGATTCCACCAGTGGTTCTTTTATTATTG
AGAATAGTTTTTGCTATCCTAAGCTTTCTGTTATTCCAGATG
GACCGGGTGNTCATTTGCGGNGAANNANACAAGTTAACTGTACGGGCGGT
CCNNNCNGGNCACTGAGGCCGGAATTGGTTAAATGACTTTTACCTACCCC
TATGGCCATGCTGTGGGAAAGAATGTCTGAGTCTGCCCCTGGCATGAGCC
AAACATCAGAAGCCCAAGATTCGGGGTCTTCCCTGCTCACGTGTCTCTAT
CCTGGAGATGCCACTCACCTTTTGTCAAACACATGGCTGAGTTCATCCAG
GACATTGTTGAGTTTCACCTGCAGCTCCTTCAGGGTTTCATTGTTTCTCG
GCATCCAGCTGAGGGAGGCAAAGNCGATATTTTTTCTGTCTTCACATGCC
CCCGGGAAAGTGTCTAATGGACTGGGGAAAGCAACTGACGCTCATGTAGT
CAGGTCTCCCTGGTAAGACTGCAATTCACACCCAAGCCATGATCTCAGGA
ATGGGACTATGGGCAAGATCCTCCAAAATGCATCCTGGTGCCTACCTCCT
TCCCGCCCATCGCCTCAAACATCTTCTCCAGCTGCACTCGTATTTGTTGT
GTGTTGTTCATGAGGATGCAGGGCTGGGAAGAGCAAAAGTCAGGCTGGTG
ACTTCCCACCACCTCTTGTTTTTTGTTTAATGGCCGCCCCCTATGGGATG
GTAGACAATATCCCTGGATATGCATAAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p16.g1 MSMg01no502_p16.g1 CHROMAT_FILE:
MSMg01no502_p16.g1 PHD_FILE: MSMg01no502_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:08 2005
         (134 letters)



>mm_chr8_74165734_74166267
          Length = 534

 Score =  259 bits (134), Expect = 4e-74
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtctccctggtaagactgcaattcacacccaagccatgatctcaggaatgggactatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtctccctggtaagactgcaattcacacccaagccatgatctcaggaatgggactatg 260

                                                                       
Query: 61  ggcaagatcctccaaaatgcatcctggtgcctacctccttcccgcccatcgcctcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagatcctccaaaatgcatcctggtgcctacctccttcccgcccatcgcctcaaaca 320

                         
Query: 121 tcttctccagctgc 134
           ||||||||||||||
Sbjct: 321 tcttctccagctgc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)