Query= MSMg01no503_e13.b1 MSMg01no503_e13.b1 CHROMAT_FILE:
MSMg01no503_e13.b1 PHD_FILE: MSMg01no503_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:31 2005
(643 letters)
>mm_chr8_104368187_104369230
Length = 1044
Score = 1069 bits (553), Expect = 0.0
Identities = 580/589 (98%), Gaps = 3/589 (0%)
Strand = Plus / Minus
Query: 4 ggaattccttaaga-ttcccttaagatggac-aaaaaattgaccttttaagtaatagcca 61
|||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 791 ggaattccttaagactt-ccttaagatggacaaaaaaattgaccttttaagtaatagcca 733
Query: 62 aaatcattatggacctaataagagaagcagcagcaaggacagctcatttcccccagtaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aaatcattatggacctaataagagaagcagcagcaaggacagctcatttcccccagtaaa 673
Query: 122 tgtgaagatctactcttatcattgaagacagaattctaagttgtgaccaaatcacaagtc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgtgaagatctactcttatcattgaagacagaattctaagttgtgaccaaatcacaagtc 613
Query: 182 aggtttttcactttctcaaacttggttgccctgtataactttagagataagtgaggacat 241
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 612 aggtttttcactttctcaaacttggttgccctgcataactttagagataagtgaggacat 553
Query: 242 ttctaagggatcatcaatgaagccattattattaatacagtgaagcaaagaaaagcgcca 301
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 552 ttctaagggatcatcaatgaagccattatgaagaatacagtgaagcaaagaaaagcgcca 493
Query: 302 tagaaagctgatatgtgaaacacggtgctcttgaaaatatttctcatctggatattctca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tagaaagctgatatgtgaaacacggtgctcttgaaaatatttctcatctggatattctca 433
Query: 362 taaagtatagatgttttactattttgcattttggatcaactttgatcagtaatgtatcaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaagtatagatgttttactattttgcattttggatcaactttgatcagtaatgtatcaa 373
Query: 422 atgttctttatcctttgagaaggtttagtggtaatgagttaattttgtatcaacagtcct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgttctttatcctttgagaaggtttagtggtaatgagttaattttgtatcaacagtcct 313
Query: 482 ttgaaatgaatgcttttctgtcaaaatgtcttcttcatagagatgaactgtggatcagga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgaaatgaatgcttttctgtcaaaatgtcttcttcatagagatgaactgtggatcagga 253
Query: 542 atactactgtggcaggtcttgggggcgagatataaaagcagctgtttct 590
|||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 252 atactactgtggcaggtcttgggggcaagatataaaagcagttgtttct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_e13.g1 MSMg01no503_e13.g1 CHROMAT_FILE:
MSMg01no503_e13.g1 PHD_FILE: MSMg01no503_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:31 2005
(541 letters)
>mm_chr8_104328861_104329801
Length = 941
Score = 907 bits (469), Expect = 0.0
Identities = 509/541 (94%), Gaps = 30/541 (5%)
Strand = Plus / Plus
Query: 1 ttgtatacttctccctccatattttcatgttctatgaaatataaggatggtttagaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtatacttctccctccatattttcatgttctatgaaatataaggatggtttagaattc 260
Query: 61 atgaagaaaataaatagaacaaacatataactgtttcctatgggttaattaaacagactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaagaaaataaatagaacaaacatataactgtttcctatgggttaattaaacagactg 320
Query: 121 cttctccttcacagtcaaggccttcccatactgtgatttaattgtctttctggtattatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctccttcacagtcaaggccttcccatactgtgatttaattgtctttctggtattatc 380
Query: 181 ttcattactgtcttacaaacgtgccaagctgcaattttcacttaaaagaacaggaaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcattactgtcttacaaacgtgccaagctgcaattttcacttaaaagaacaggaaacat 440
Query: 241 ccaactaagcttctaaatattcaaccatggaatatatatatatatatatatatatatata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaactaagcttctaaatattcaaccatggaatatatatatatatatatatatatatat- 499
Query: 301 tatatatatatatatattgacaactttgttattttcacagtcaaattgacattcagtatg 360
|||||||||||||||||||||||||| |||||
Sbjct: 500 -----------------tgacaactttgttattttcacagtca------------gtatg 530
Query: 361 gaagataaaaaggcttctgtttatgtataaatgacttggcatgttcatctcattaacaaa 420
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 531 gaagataaaaagtcttctgtttatgtataaatgacttggcatgttcatctaattaacaaa 590
Query: 421 agttttatttgcaagtgtttcacattaaagaaaatgatcatcttgggactatttaatgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agttttatttgcaagtgtttcacattaaagaaaatgatcatcttgggactatttaatgat 650
Query: 481 atctgaacatctgattccatacataattcccatttagctcttcatttcttttgaatcaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atctgaacatctgattccatacataattcccatttagctcttcatttcttttgaatcaca 710
Query: 541 c 541
|
Sbjct: 711 c 711
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 290 atatatatatatatatatatatatatatt 318
|||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatatt 471
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 271 aatatatatatatatatatatatatatat 299
|||||||||||||||||||||||||||||
Sbjct: 500 aatatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 288 atatatatatatatatatatatatatat 315
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 286 atatatatatatatatatatatatatat 313
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 284 atatatatatatatatatatatatatat 311
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 282 atatatatatatatatatatatatatat 309
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 280 atatatatatatatatatatatatatat 307
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 278 atatatatatatatatatatatatatat 305
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 276 atatatatatatatatatatatatatat 303
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 274 atatatatatatatatatatatatatat 301
||||||||||||||||||||||||||||
Sbjct: 499 atatatatatatatatatatatatatat 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 11
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
