BAC Information

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BAC

Clone NameMSMg01-503G19
Chromosome8 (Build37)
Map Location 106,358,183 - 106,358,772
singlet/doubletsinglet
Overlap geneLOC100041397
Upstream geneEG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G19.T7 (MSMg01no503_g19.b1)MSMg01-503G19.TJ (MSMg01no503_g19.g1)
ACCAG578544AG578545
length742736
length of high quality
(start - end)
606 (55 - 660)589 (86 - 674)
definitionCHROMAT_FILE: MSMg01no503_g19.b1 PHD_FILE: MSMg01no503_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:41 2005CHROMAT_FILE: MSMg01no503_g19.g1 PHD_FILE: MSMg01no503_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTCTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCA
GGATCCGCGGAATTCTCACCTGTTTCATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCAATATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAG
CCCAAAACCTATGATACCCAAGATATAAGATACAATTTCCTAAACACATG
AAACTCAAGAAAATGAAGACTGAAGTGTGGACACTATGCCCC
TTTTTTTTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTAGGAAGGTAT
TGGACATTCTGTAAATCCTACACAATGGAGTCTAAGAAATTCATTTATCA
GGATAAGCAGAGTTTCTCACAGGCAGGAGTTGGTCTACCACGTCTCCCTA
GGAGACACAGAGTAATCAGAGACATGGACATCTTGATATACACCATCTTT
CAGAATCACTTTTACTGAACAATGTGTGCCTGAGGATTCCACTAATTCCT
CAGTGGGGAGAGATGAGAGTTTCTGTTATTCTATTGCAATAGTGATGGTG
GCTATTACTTGTCGTTGGTTTATTTGTTTATATAAGTCAATACTAAACTA
TTGTAATGCTTTTAACATTGTAGAAACAGTCATTTCCAGTTACAGTGTTA
TGAGGAGAGTTATAAAGTGTCCCAGGCATAGTAGACATTGCTCAGTATGT
GTTCAGGTTATTTAACCTTTGATGGGAAAATTCAGCAAGCAGTCTAGTGT
GGAAATGCCTTTAAATCCTTTGTGTGGGCCTTTAAAATCAAAGTAACCCC
AATCTTGCACCTTTTATGGTAGAAAATGAATGTGTTAAAAGTTTATTAAA
CTACTATAGACATTTACTGGCTGGATCTTCTAACTGATACCTGAAAAATG
TAAAGCACACCTTTTATCTTCTCCTTAGAGGCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g19.g1 MSMg01no503_g19.g1 CHROMAT_FILE:
MSMg01no503_g19.g1 PHD_FILE: MSMg01no503_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:41 2005
         (589 letters)



>mm_chr8_106357983_106358972
          Length = 990

 Score = 1094 bits (566), Expect = 0.0
 Identities = 584/590 (98%), Gaps = 1/590 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctaggaaggtattggacattctgtaaatcctacacaatggagtctaagaaattcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 agcctaggaaggtattggacattctgtaaatcctacacaatggagtctaagaaattcatt 731

                                                                       
Query: 61  tatcaggataagcagagtttctcacaggcaggagttggtctaccacgtctccctaggaga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 730 tatcaggataagcagaatttctcacaggcaggagttggtctaccacgtccccctaggaga 671

                                                                       
Query: 121 cacagagtaatcagagacatggacatcttgatatacaccatctttcagaatcacttttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cacagagtaatcagagacatggacatcttgatatacaccatctttcagaatcacttttac 611

                                                                       
Query: 181 tgaacaatgtgtgcctgaggattccactaattcctcagtggggagagatgagagtttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgaacaatgtgtgcctgaggattccactaattcctcagtggggagagatgagagtttctg 551

                                                                       
Query: 241 ttattctattgcaatagtgatggtggctattacttgtcgttgg-tttatttgtttatata 299
           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 550 tgattctattgcaatagtgatggtggctattacttgtcgttggttttatttgtttatata 491

                                                                       
Query: 300 agtcaatactaaactattgtaatgcttttaacattgtagaaacagtcatttccagttaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agtcaatactaaactattgtaatgcttttaacattgtagaaacagtcatttccagttaca 431

                                                                       
Query: 360 gtgttatgaggagagttataaagtgtcccaggcatagtagacattgctcagtatgtgttc 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtgttatgaggagggttataaagtgtcccaggcatagtagacattgctcagtatgtgttc 371

                                                                       
Query: 420 aggttatttaacctttgatgggaaaattcagcaagcagtctagtgtggaaatgcctttaa 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 370 aggttatttaacctttgatgggagaattcagcaagcagtctagtgtggaaatgcctttaa 311

                                                                       
Query: 480 atcctttgtgtgggcctttaaaatcaaagtaaccccaatcttgcaccttttatggtagaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atcctttgtgtgggcctttaaaatcaaagtaaccccaatcttgcaccttttatggtagaa 251

                                                             
Query: 540 aatgaatgtgttaaaagtttattaaactactatagacatttactggctgg 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aatgaatgtgttaaaagtttattaaactactatagacatttactggctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space:   567420
Effective search space used:   567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)