BAC Information

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BAC

Clone NameMSMg01-503L16
Chromosome8 (Build37)
Map Location 43,829,511 - 43,829,751
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503L16.T7 (MSMg01no503_l16.b1)MSMg01-503L16.TJ (MSMg01no503_l16.g1)
ACCAG578776AG578777
length729721
length of high quality
(start - end)
566 (83 - 648)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no503_l16.b1 PHD_FILE: MSMg01no503_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:06 2005CHROMAT_FILE: MSMg01no503_l16.g1 PHD_FILE: MSMg01no503_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATTTTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCTCACCTTTTGCATACCGAATGGCAGAGAAGCACT
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATCCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTA
GCCCCCAACCTAGGATACCCAAGATATAAGATATAATTTGCTTAACACAT
GAAACTCCAGAAGAATGAAGACTGAAGTG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATGTTGAAAATTTCAATCATTTTA
GTTAAAATCTGGAGAAGTTGGACCTTATTTTTCTGACATGGCTGATATTC
AAATGCATCCTTAATAGAAAATATTGTTTCTCTTTAATATTTTTTTATTG
TTGTTGTTGTGAGTGATGAACCTGAAACTTTCACACAATGAGGCAGGTGA
TCTCTTTTTTTTTTCAGTGAACATGACTTGTATCCAAGCTACCCAATAAT
TACAAACCTCACTAATTTTATTACAAAAGATATTCCAGTGATATTTTTTT
GATGAAAATTGGGAAACAAAACTTGGCTTGTTAAAATAGTTTCTCATGTT
CATTCTTGATATCATATTACTAAGCAGATTTTATAAAAAGATTTGTGGCA
ATTAACTTTTTTAAGGTCTATACAAATTTTGGGTAGGTGATAGATATCTC
AAGACCCAACATACCACAGTTAAATGAAATATGTTAAAAAAAAAAGTCTT
ACCTGATTTCTTGGTCATGCTAAAGTCTATGTGAGCAAAAAAGGGAACAT
TTAATTATGTATGTAAATATAGTGTTAAATATGTATACACACATATGTAT
ATATATGCTCATGTGCATTTAAAATAAGATACGGATGATATGTAGATTTT
ATATAAAGGTATTTATGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_l16.g1 MSMg01no503_l16.g1 CHROMAT_FILE:
MSMg01no503_l16.g1 PHD_FILE: MSMg01no503_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:06 2005
         (242 letters)



>mm_chr8_43829311_43829952
          Length = 642

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgttgaaaatttcaatcattttagttaaaatctggagaagttggaccttatttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatgttgaaaatttcaatcattttagttaaaatctggagaagttggaccttatttttct 382

                                                                       
Query: 61  gacatggctgatattcaaatgcatccttaatagaaaatattgtttctctttaatattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatggctgatattcaaatgcatccttaatagaaaatattgtttctctttaatattttt 322

                                                                       
Query: 121 ttattgttgttgttgtgagtgatgaacctgaaactttcacacaatgaggcaggtgatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattgttgttgttgtgagtgatgaacctgaaactttcacacaatgaggcaggtgatctc 262

                                                                       
Query: 181 ttttttttttcagtgaacatgacttgtatccaagctacccaataattacaaacctcacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttttcagtgaacatgacttgtatccaagctacccaataattacaaacctcacta 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)