Query= MSMg01no504_f05.b1 MSMg01no504_f05.b1 CHROMAT_FILE:
MSMg01no504_f05.b1 PHD_FILE: MSMg01no504_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:54 2005
(585 letters)
>mm_chr8_49508392_49509375
Length = 984
Score = 911 bits (471), Expect = 0.0
Identities = 567/631 (89%), Gaps = 52/631 (8%)
Strand = Plus / Minus
Query: 5 gaattcattctctgcctctgtgagatgatcaaaatatattgtatgagaaattttttaaat 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 849 gaattcgttctctgcctctgtgagatgatcaaaatatattgtatgagaaatttcttaaat 790
Query: 65 gaaagctattgattgtctcaattttatttgataatttttattggttctcatttaatttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaaagctattgattgtctcaattttatttgataatttttattggttctcatttaatttaa 730
Query: 125 taatagatttttttattttttatttataaaagcaggatgtttacactccttttttgttgc 184
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 729 taataga-ttttttattttttatttataaaagcagggtgtttacactccttttttgttgc 671
Query: 185 tgtgattcaggacatggacaatagctcaggctttgaaggtttgagccggtggggccatct 244
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 670 tgtgattcaggacatggacaacagctcaggctttgaa-gtttgagccggtggggccatct 612
Query: 245 cagagcccagcacatcagtgctaccctccatacatgtcataaagtcagtaacgtttttaa 304
|||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 611 cagagcccagcacatcagtgctcccctccgtacatgtcataaagtcagtaacatttttaa 552
Query: 305 acagtctttaaaagtacaataccttgggacagtattatgcagtcctaagaaactcatatt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 551 acagtctttaaaagtacaataccttgggacagtattatgcagtcctaagaaacttatatt 492
Query: 365 gtagtgtgtgtctttaaggaccttggcattagttgggaaactagacatctttataaattg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 gtagtgtgtgtctttaaggaccttggcattagttgggaaactagacatctttataaatcg 432
Query: 425 cttttcagtttaaaacactatgagtaaactctgctttatataagtttggtgctttctaat 484
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttttcattttaaaacactgtgagtaaactctgctttatataagtttggtgctttctaat 372
Query: 485 gtaagccttcacaatg-----------------------------------ac------- 502
||||||| |||||||| ||
Sbjct: 371 gtaagccctcacaatgtatatccaattaatattcttattgattttttttatacaatacat 312
Query: 503 --------tgttttccccctcccacaactcctcccactgtatattactcacctgtcttgc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttggatcctgttttccccctcccacaactcctcccactgtatattactcacctgtcttgc 252
Query: 555 attctctctttctccaaaacaaaaaccaaac 585
|||||||||||||||||||||||||||||||
Sbjct: 251 attctctctttctccaaaacaaaaaccaaac 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_f05.g1 MSMg01no504_f05.g1 CHROMAT_FILE:
MSMg01no504_f05.g1 PHD_FILE: MSMg01no504_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:54 2005
(608 letters)
>mm_chr8_49363198_49364204
Length = 1007
Score = 1127 bits (583), Expect = 0.0
Identities = 601/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 1 aaacctccaagggtctcgatcaagtttaagaacttcctaggtatggaacctgtatgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacctccaagggtctcgatcaagtttaagaacttcctaggtatggaacctgtatgcttc 260
Query: 61 aaatacgaaataacgtctacagtcccaaggtaggccgtgcattagagagacaggcttaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatacgaaataacgtctacagtcccaaggtaggccgtgcattagagagacaggcttaga 320
Query: 121 ttctattagagtcatgacactctttccaacaaagacggaaccgagctgaggttagtgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctattagagtcatgacactctttccaacaaagacggaaccgagctgaggttagtgttt 380
Query: 181 agctgaccttcttacaatgaaatctgccattatgaataattcagtatagcaaatattttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgaccttcttacaatgaaatctgccattatgaataattcagtatagcaaatattttt 440
Query: 241 ttttttccagcccgggctcacacaatcctccctggttataatgaaaatcaaaaagtttcc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttt-ccagcccgggctcacacaatcctccctggttataatgaaaatcaaaaagtttcc 499
Query: 301 gaaccgaatggcattgtaacggatgggcgtaatacttgagtgagagtcaatcttgactcc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 gaaccgaatggcattgtaacggatgggcgtaatacttgagcgagagtcaatcttgactcc 559
Query: 361 tttaaagcttttattgcacaggacttttagcccattacctccccaaattcctcatagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttaaagcttttattgcacaggacttttagcccattacctccccaaattcctcatagcaa 619
Query: 421 gcagtttttcccatggcatagagacaaaagttgaacagctccgaagtggtaagggctaac 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 gcagtttttcccatggcatagagacaaaagttgaacagctctgaagtggtaagggctaac 679
Query: 481 agggttgcttagcgatggtttgtacagaggcctgggacgtattcacaacaaggaaattcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agggttgcttagcgatggtttgtacagaggcctgggacgtattcacaacaaggaaattcc 739
Query: 541 aggacaatgaaggaatctggagtttaataggacgtgacatgaatgatagagtgtggcttt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 aggacaatgaaggaatctggagtttaataggacgtgacatgaatgatagagtatggcttc 799
Query: 601 ggtcttt 607
|||||||
Sbjct: 800 ggtcttt 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
