Query= MSMg01no504_j23.b1 MSMg01no504_j23.b1 CHROMAT_FILE:
MSMg01no504_j23.b1 PHD_FILE: MSMg01no504_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:16 2005
(648 letters)
>mm_chr8_119188942_119189991
Length = 1050
Score = 1015 bits (525), Expect = 0.0
Identities = 629/691 (91%), Gaps = 45/691 (6%)
Strand = Plus / Minus
Query: 3 ggaattcactttgtataccaggctggcttcgaactcagaaatccacctgcctctgcctcc 62
||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| ||||
Sbjct: 773 ggaattcactttgtagaccaggttggcctcgaactcagaaatctgcctgcctctgtctcc 714
Query: 63 cgagtgctgggattcaaggcgtgtgccaccac-gcccagctttcag-------------- 107
| |||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct: 713 caagtgctgggattaaaggcgtgtgccaccactgcccagatttcagtttctttttctttc 654
Query: 108 ----------------------------tttgtttgtttgtttctttctttctctctttc 139
||| ||| ||| ||||||||||||| ||||||
Sbjct: 653 tttccttctttctttctttctttctttctttctttctttctttctttctttctttctttc 594
Query: 140 ttt-ttttttttttaataccttatagttctaactccaaaacttttccatgtattctttct 198
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttctttttttttaaataccttatagttctaactccaaaacttttccatgtattctttct 534
Query: 199 gagtgcgccccggctttatattccagaagatccccttaattcagcctttttactattctg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gagtgcgccccggctttatattccagaagatccccttaattcagcctttttactattctg 474
Query: 259 -ttttttgctttaccatttttaattcccgagagtttttaaaacttggttctggaatcatt 317
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 473 tttttttgctttaccatttttaattcccgagagtttttaaaacttggttctggaaccatt 414
Query: 318 ctatttttattgcagtctgttctgccgaatgtgtgttgtcttatctcctcttatctgttg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctatttttattgcagtctgttctgccgaatgtgtgttgtcttatctcctcttatctgttg 354
Query: 378 ggagctcgtaacagctttattgaggtaaaattgacataaatataatcatacacgaagtat 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggagctcgtaacagctttattgaggtaaaattgacataaatataatcatacacgaagtat 294
Query: 438 gaaattcggcagatttttgacatatgtttcgcttgtggaactatcacctccatcagccca 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaaattcggcagatttttgacatatgtttcgcttgtggaactatcacctccatcagccca 234
Query: 498 cacacctattacttccaaatgtttccttttgactcttgcaatgcacgctgcctcttccac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cacacctattacttccaaatgtttccttttgactcttgcaatgcacgctgcctcttccac 174
Query: 558 ttcctccttacccatcagccactgctgcttcccacagctacaaattgtttgcattcccac 617
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 173 ttcctccttacccatcagccactgctgtttcccacagctacaaattgtttgcattcctac 114
Query: 618 agttttatataaatccagcaataccgtattg 648
|||||||||||||||||||||||||||||||
Sbjct: 113 agttttatataaatccagcaataccgtattg 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_j23.g1 MSMg01no504_j23.g1 CHROMAT_FILE:
MSMg01no504_j23.g1 PHD_FILE: MSMg01no504_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:16 2005
(566 letters)
>mm_chr8_119092368_119093333
Length = 966
Score = 1056 bits (546), Expect = 0.0
Identities = 561/566 (99%)
Strand = Plus / Plus
Query: 1 tacagatagatcaccaaagggataggggtggggtggggacacaaacaaacggagacaaag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagatagatcaccaaagggataggggtggggtggggacacaaacaaacggagacaaat 260
Query: 61 tttcaatctttttattcaaagcagcttctcacaatgtataaatactgcatattagcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaatctttttattcaaagcagcttctcacaatgtataaatactgcatattagcacac 320
Query: 121 atgaaaaatacaacttctaaggcacccagaaatatgttcatatacgttacaggaccattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaaatacaacttctaaggcacccagaaatatgttcatatacgttacaggaccattc 380
Query: 181 acaaagagcggacgatttgctccagacagtcagcatttgataaatcagaagattattacc 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 acaaagagcggacgatttgctccagacagtcagcatttgataaatcaggagattattacc 440
Query: 241 ctcagtactgctcccagtttggggaaaatatttacagtgtggagaatggaccagctaaac 300
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ctcagtactgcacccagtttggggaaaatatttacagcgtggagaatggaccagctaaac 500
Query: 301 ctgcatataaccctatgaaggactcatacttacaaggatccggaactaaagaccttcccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcatataaccctatgaaggactcatacttacaaggatccggaactaaagaccttcccg 560
Query: 361 tgaaaatctggcaagaaaaagaaaatgagcaacctaacctgcaaaggtatccgtggattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaaatctggcaagaaaaagaaaatgagcaacctaacctgcaaaggtatccgtggattt 620
Query: 421 tggtgtgtttgctacgtccgtgatccaacccagaaactcccagggtgagctggatatgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgtgtttgctacgtccgtgatccaacccagaaactcccagggtgagctggatatgtt 680
Query: 481 tttggtagcctgcttcagtatccgaagtttggtaataagccttaccagtagaataccact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttggtagcctgcttcagtatccgaagtttggtaataagccttaccagtagaataccact 740
Query: 541 tctttaacgtcagtcttctggattag 566
|||||||| |||||||||||||||||
Sbjct: 741 tctttaacatcagtcttctggattag 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
