Query= MSMg01no505_m02.b1 MSMg01no505_m02.b1 CHROMAT_FILE:
MSMg01no505_m02.b1 PHD_FILE: MSMg01no505_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:44 2005
(241 letters)
>mm_chr8_12871000_12871642
Length = 643
Score = 354 bits (183), Expect = e-102
Identities = 196/201 (97%), Gaps = 2/201 (0%)
Strand = Plus / Plus
Query: 5 gaattctatggctaacctcctgggacttcctttgcacactcagag--gcatctgactaca 62
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattctatggcaaacctcctgggacttcctttgcacactcagagaggcatctgactaca 264
Query: 63 agctgaccctttccactggctattgtctgcaacgttaagcaagcttgcttattgtgtgtg 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 agctgaccctttccactggctattgtctgcaatgttaagcaagcttgcttattgtgtgtg 324
Query: 123 gatctatatctgtctgtgtctctctgttctccctctctccccttctctctctctctctct 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatctatatctgtctgtgtctctctgttctccctctctccccttctctctctctctctct 384
Query: 183 ctctctctctctctctctctc 203
|||||||||||||||||||||
Sbjct: 385 ctctctctctctctctctctc 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 643
Length adjustment: 9
Effective length of query: 232
Effective length of database: 634
Effective search space: 147088
Effective search space used: 147088
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no505_m02.g1 MSMg01no505_m02.g1 CHROMAT_FILE:
MSMg01no505_m02.g1 PHD_FILE: MSMg01no505_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:44 2005
(615 letters)
>mm_chr8_13040983_13041997
Length = 1015
Score = 1058 bits (547), Expect = 0.0
Identities = 562/567 (99%)
Strand = Plus / Minus
Query: 49 ccttccttccttccttccttccttccttccttccttccttccttccttccttctttcttt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ccttccttccttccttccttccttccttccttccttccttccttccttccttctttcttt 931
Query: 109 cctgagaaaggcccgtactatgtatccttggctggcttggaccaggccctcaagttcaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 cctgagaaaggcccgtactatgtatccttggctggcttggaccaggccctcaagttcaca 871
Query: 169 ctgatccacctgcctccacctcctgagtgctgggatgaaaggcatgtgccaccacaatga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ctgatccacctgcctccacctcctgagtgctgggatgaaaggcatgtgccaccacaatga 811
Query: 229 agaataaaaagaattcttgattccctttctgttttctggtggctgaaatggactgtggtg 288
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agaataaaaagaaatcttgattccctttctgttttctggtggctgaaatggactgtggtg 751
Query: 289 gacagcaacataagaattctcttgaatactatgatctgctgaagtgaggtggtatctggt 348
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 750 gacagcaacataagaattctcttgaataccatgatctgctgaagtgaggtggtatctggt 691
Query: 349 cacatgaccagattgtggctttctctctagaccgacttgcagaggtgtggtttccaggac 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cacatgaccggattgtggctttctctctagaccgacttgcagaggtgtggtttccaggac 631
Query: 409 actcatcggtacatttccctccttctcttgtcttgtgtggcatggcctcaccacagtgaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 actcatcggtacatttccctccttctcttgtcttgtgtggcatggcctcaccacagtgaa 571
Query: 469 tggccttggcttgagtctcaaaaggctgtgactgctcaatttaagtgctgcatgcttctt 528
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 570 tggccttggcttgagtctcaaaaggctgtgactgctcagtttaagtgctgcatgcttctt 511
Query: 529 tctcgaccagtaaatccaactaccccattagagccaccttagagtggtctgcgactagaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tctcgaccagtaaatccaactaccccattagagccaccttagagtggtctgcgactagaa 451
Query: 589 gactctgtgtctgtgggtgacatcaga 615
||||| |||||||||||||||||||||
Sbjct: 450 gactccgtgtctgtgggtgacatcaga 424
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
