BAC Information

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BAC

Clone NameMSMg01-506C20
Chromosome8 (Build37)
Map Location 13,294,707 - 13,478,842
singlet/doubletdoublet
Overlap geneTmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2
Downstream geneLOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506C20.T7 (MSMg01no506_c20.b1)MSMg01-506C20.TJ (MSMg01no506_c20.g1)
ACCAG580635AG580636
length785774
length of high quality
(start - end)		400 (75 - 474)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no506_c20.b1 PHD_FILE: MSMg01no506_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:17 2005CHROMAT_FILE: MSMg01no506_c20.g1 PHD_FILE: MSMg01no506_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,294,707 - 13,295,106)(13,478,594 - 13,478,842)
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGA
ATTCACCCTGTATTCCAGGCTGGCTTCGAAATCTGCCTGCCTCTGCCTCC
CAAGTGCTGAGATTAAAGGCGTGCGCCACCACTGCCCGGCCTCAGTCTTT
CCCCTTTAAGTGCTGATGTGAAGGCATGTGATTGTAACTGTATAATATTG
GTTATCGTTGCAGGTCAAAGGCGTCAACTTTGAGGCAGTTCTGAGAGTGG
AGGAGGAGGAGGCCAGCTCCAAGCAGAATATGACGAAGCGGGAGGTGGAG
GACGGCCTGGGTCTCAGCATGCTCTTCTACTCCCAGAACAACCAGTACAT
TCTGACCAAGCCCAGAGATTCTACTATCCCACGCGCAGACCACCACTTCA
TAAAGGCAAGCCATGGCCTTCAGCATGGGCTGGCCAGTGAGGCCGTGTCT
CCTGCCTCTCACTGGACGCCAGCCTTCCTGCTGCCAGAAGCTTCCCTGGA
ACACTCAGATCTGTTCTCTCAGAGGCCTTTCCCATTTTGTTTTATTTGTT
GAGCCAGGCTCTTACTATGGCGCCTCGGCTGGCCCTTAATCTCACTGGGG
TAGTGCAGAATGGGCCTTTAACTCCTCCCCAATTCCCCCGGTCCCCGGGT
TCCCCAAGTGTCAAGGGTTTATAAGGCTCGGCCACACCCCCACAATTTGA
AAGTCTCCAGGTTACCCCCCCTCCCCCTTTGTAGCTCGATAAAAAAAATG
GGGTTGTCCCCACAAGGGGTCCCCCTCTTCCTGGG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCAGCCCTGAGGTTCATCCTCTAGA
GCTGCAGGCTCCTCAAGAGTTGAGGCTCCAGGGAGCTCTTTGGGAACCAG
GATTGGAGTGAAGGAAATAGCACATGGCTCTTAGCACCCCAGCTGATGGG
TCCCACCTTGATCTACTCTGGAGCAGGTGTGAGGTATTAGGTAAAGCTGC
AAACAAGATGGCAGAGTCTGCCAAGCTTCTCACTCAACACAGCCCTGCGG
TGTCCACAGGTCGTCTGGATAGATCTGTTCAGGGTGCTAGACTAGGCTGT
GCATTGGTCTCATGACTGCTNGGCACTGATTGGTGGGTCCATTTTGTCCT
TCACCCTGTCCCCTTGTGCACCTAGGGACCTCTAGAACCCAGTCTATGGT
TTTTCCCACCAGCAGCAGCAGTTCATGGTATTACCCATGAGGCCAGCCAG
GGAATGGCCCCGGGAAGAAACCCCTCCCCCTTTCTTTCAGGGCCAAAAGT
CCAAGGAAGGGGGCCCCAAAAAAAAGGGGGGTTGTAAACCAGGTTTTGGC
CCAACAAAACCAGGAAACTTTCCCAGGGGCCCGCCCCAAAAGGGGTTTTC
CCCTTTGTGCTAAAAAGGGCCAAACCCTGGCAAGGGAAAAGCCCCCGGTT
TGGGCCAAGGAAAACCTCCCCCGGGATTTCCCTATCCGGGGGAGAGGGGG
GGGGGGAATAAGAGTTCCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_c20.b1 MSMg01no506_c20.b1 CHROMAT_FILE:
MSMg01no506_c20.b1 PHD_FILE: MSMg01no506_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:17 2005
         (400 letters)



>mm_chr8_13294507_13295306
          Length = 800

 Score =  743 bits (384), Expect = 0.0
 Identities = 396/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgaaatctgcctgcctctgcctcccaagtgctgagattaaaggcgtgcgccaccactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcgaaatctgcctgcctctgcctcccaagtgctgagattaaaggcgtgcgccaccactg 260

                                                                       
Query: 61  cccggcctcagtctttcccctttaagtgctgatgtgaaggcatgtgattgtaactgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccggcctcagtctttcccctttaagtgctgatgtgaaggcatgtgattgtaactgtata 320

                                                                       
Query: 121 atattggttatcgttgcaggtcaaaggcgtcaactttgaggcagttctgagagtggagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattggttatcgttgcaggtcaaaggcgtcaactttgaggcagttctgagagtggagga 380

                                                                       
Query: 181 ggaggaggccagctccaagcagaatatgacgaagcgggaggtggaggacggcctgggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggaggccagctccaagcagaatatgacgaagcgggaggtggaggacggcctgggtct 440

                                                                       
Query: 241 cagcatgctcttctactcccagaacaaccagtacattctgaccaagcccagagattctac 300
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcatgctcatcgactcccagaacaaccagtacattctgaccaagcccagagattctac 500

                                                                       
Query: 301 tatcccacgcgcagaccaccacttcataaaggcaagccatggccttcagcatgggctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tatcccacgcgcagaccaccacttcataaaggcaagccatggccttcagcatgggttggc 560

                                                   
Query: 361 cagtgaggccgtgtctcctgcctctcactggacgccagcc 400
           ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 cagtgaggccgtgtctcctgcctctcactggacaccagcc 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_c20.g1 MSMg01no506_c20.g1 CHROMAT_FILE:
MSMg01no506_c20.g1 PHD_FILE: MSMg01no506_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:17 2005
         (249 letters)



>mm_chr8_13478394_13479042
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagccctgaggttcatcctctagagctgcaggctcctcaagagttgaggctccaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agcagccctgaggttcatcctctagagctgcaggctcctcaagagttgaggctccaggga 390

                                                                       
Query: 61  gctctttgggaaccaggattggagtgaaggaaatagcacatggctcttagcaccccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctctttgggaaccaggattggagtgaaggaaatagcacatggctcttagcaccccagct 330

                                                                       
Query: 121 gatgggtcccaccttgatctactctggagcaggtgtgaggtattaggtaaagctgcaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gatgggtcccaccttgatctactctggagcaggtgtgaggtattaggtaaagctgcaaac 270

                                                                       
Query: 181 aagatggcagagtctgccaagcttctcactcaacacagccctgcggtgtccacaggtcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagatggcagagtctgccaagcttctcactcaacacagccctgcggtgtccacaggtcgt 210

                    
Query: 241 ctggataga 249
           |||||||||
Sbjct: 209 ctggataga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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