BAC Information

Click to search

BAC

Clone NameMSMg01-506I12
Chromosome8 (Build37)
Map Location 17,088,218 - 17,201,893
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506I12.T7 (MSMg01no506_i12.b1)MSMg01-506I12.TJ (MSMg01no506_i12.g1)
ACCAG580904AG580905
length732747
length of high quality
(start - end)
297 (330 - 626)653 (82 - 734)
definitionCHROMAT_FILE: MSMg01no506_i12.b1 PHD_FILE: MSMg01no506_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:46 2005CHROMAT_FILE: MSMg01no506_i12.g1 PHD_FILE: MSMg01no506_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,088,218 - 17,088,513)(17,201,241 - 17,201,893)
sequence
GGCACACTTATAATTGCGGCGTCTAANGAATACTAATTCATACTAGGGGN
GGAANNCNNNGGNGTTCCTAAAATAGGATTGANTGATTGATTTTTTAACA
CACTCATGTGATTTTCTTTTCTTTCTCTCTTTGGTATATGAGGGTGGAGA
ATGATGGATAATGATGTTGTAATCTCTGTCTAGGTCACTGGATGCAGGCA
GGAGGAAATGTGCTCAGCTTGGTCCTTTTTATGCATGGTACTATGTGGAG
AGGTTTCTCCTTGTCCAGTACTTCACTAGACCTTCCTACAAGTTGATGCC
CGCTAGGCAGATTTGCCCTTGTCTCATTTTTGTCAAGGCTGAGGGCTGAG
GTAACAGCCCAAGGAAAATAACAGAAAGGAATCATCATATCTTTGTCACC
GACTCCTGCCTGGGACAACACTTAGTGGAATCATACACTGACCACATTTT
CTTTCCTTTTAGTTATTATTTCTATAGATGAGAAAGGTGCCTGGAGTGAC
TTTCTAAAATTTTCTACACAGGACCTTACCTACTGAAGGGAACTTTTTCT
TTTATATCTACTTGCTATACAAAAGAAAGAACATTTCCTTGATACAACTT
CACTTATAGACCCTAGCTTTCATGTCCTTGAGAAAGAACCCTTTGGTAGT
TTGAATGATAATGTCCTGCATAGGCTCAGACACTTGCTCCCTAGTCAATA
GGACTGGTTATGTATGTTTAAGAGGTGTGGCC
CTTCCCCGATGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTGGTCCTATGGGAAT
ATGTTCACTGATGCCTTCCAACAGTTGATAAGTGACAGGTGAACATAGCT
CAGCAGAAAATAAGACTCTGGTATTCTGGGATATCCTCTATACAATCAGT
AGAGTTGGATATAGCATTTTCTGCTTTATTTTTCCTTTTGTGATAAACCA
AAGCTCTGATGAGTTTTTAAAAGTCATTCTAGTTACCACACCTGACAGGC
AGTGTTCTTCAGAAGCAAATGTTAGTAACATCTCAAAATTGTCATCAAAT
GCAATTGGTTAGCAGGTTGGTGAGTGTGAAGCCCAAGGGCCAGTAAAGAA
GATTAGGATATCTCATCAGGTGAGAATAGAATAAGGTCAGGTAGCCATGC
CTTCTGTGAACAAGAAATCACATGGATTTTATTATGGGAGACTGTAGGTG
ATTATAAAGGAAGGTAGGCTAGTGGTAGGCACATTTCTTATAAAACTGGG
GTGAAGAAGATGGCTCTAGGAGGGAAGATGGCTTACATATTTTGGAGCAC
ACTTACTTCAGATCATGAAAATATGTGTTAACCTCAGAGACAGCAACATT
TTGTAGCATGCCCAAACCCTGTCCTGAATATAAACAGGAAGGTATTTGAA
CTTGCTCTGCTTGCATGGTTAAGATGACTTCAAGAAGAAAGAATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_i12.b1 MSMg01no506_i12.b1 CHROMAT_FILE:
MSMg01no506_i12.b1 PHD_FILE: MSMg01no506_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:46 2005
         (297 letters)



>mm_chr8_17088017_17088713
          Length = 697

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtcaaggctgagggctgaggtaacagcccaaggaaaataacagaaaggaatcatcatat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtcaaggctgagggctgaggtaacagcccaaggaaaataacagaaaggaatcatcatat 261

                                                                       
Query: 62  ctttgtcaccgactcctgcctgggacaacacttagtggaatcatacactgaccacatttt 121
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 262 ctttgtcaccgactcctgcctgggacaacatttagtggaatcagacactgaccacatttt 321

                                                                       
Query: 122 ctttccttttagttattatttctatagatgagaaaggtgcctggagtgactttctaaaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctttccttttagttattatttctatagatgagaaaggtgcctggagtgactttctaaaat 381

                                                                       
Query: 182 tttctacacaggaccttacctactgaagggaactttttcttttatatctacttgctatac 241
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 tttctacacaggaccttacctactgaaggggactttttcttttatatctacttgctatac 441

                                                                   
Query: 242 aaaagaaagaacatttccttgatacaacttcacttatagaccctagctttcatgtc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaagaaagaacatttccttgatacaacttcacttatagaccctagctttcatgtc 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no506_i12.g1 MSMg01no506_i12.g1 CHROMAT_FILE:
MSMg01no506_i12.g1 PHD_FILE: MSMg01no506_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:46 2005
         (653 letters)



>mm_chr8_17201041_17202093
          Length = 1053

 Score = 1147 bits (593), Expect = 0.0
 Identities = 638/653 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctggtcctatgggaatatgttcactgatgccttccaacagttgataagtgacaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 853 ttcctggtcctatgggaatatgttcactgatgccttccaacagttcataagtgacaggtg 794

                                                                       
Query: 61  aacatagctcagcagaaaataagactctggtattctgggatatcctctatacaatcagta 120
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 793 aacatagctcagcagaaaataagactctggcattctgggatatcctctatgcaatcagta 734

                                                                       
Query: 121 gagttggatatagcattttctgctttatttttccttttgtgataaaccaaagctctgatg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gagttgggtatagcattttctgctttatttttccttttgtgataaaccaaagctctgatg 674

                                                                       
Query: 181 agtttttaaaagtcattctagttaccacacctgacaggcagtgttcttcagaagcaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtttttaaaagtcattctagttaccacacctgacaggcagtgttcttcagaagcaaatg 614

                                                                       
Query: 241 ttagtaacatctcaaaattgtcatcaaatgcaattggttagcaggttggtgagtgtgaag 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 613 ttagtaacatctcaaaattgtcatcaaatgcaattggttagcagattggtgagtgtgaag 554

                                                                       
Query: 301 cccaagggccagtaaagaagattaggatatctcatcaggtgagaatagaataaggtcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 cccaagggccagtaaagaagattaggatatctcatcaggtgagaatagaatcaggtcagg 494

                                                                       
Query: 361 tagccatgccttctgtgaacaagaaatcacatggattttattatgggagactgtaggtga 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aagccatgccttctgtgaacaagaaatcacatggattttattatgggagactgtaggtga 434

                                                                       
Query: 421 ttataaaggaaggtaggctagtggtaggcacatttcttataaaactggggtgaagaagat 480
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 433 ttataaaggaaggtaggctagtggtaggcacatttcttataaaattggagtgaagaagat 374

                                                                       
Query: 481 ggctctaggagggaagatggcttacatattttggagcacacttacttcagatcatgaaaa 540
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 373 ggctctaggagggaagagggcttacatattttggaacacacttacttcagatcatgaaaa 314

                                                                       
Query: 541 tatgtgttaacctcagagacagcaacattttgtagcatgcccaaaccctgtcctgaatat 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tctgtgttaacctcagagacagcaacattttgtagcatgcccaaaccctgtcctgaatat 254

                                                                
Query: 601 aaacaggaaggtatttgaacttgctctgcttgcatggttaagatgacttcaag 653
           |||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct: 253 aaacaggaaggtgtctgaacttgctctgcttgcatggtaaagatgacttcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)