BAC Information

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BAC

Clone NameMSMg01-506N20
Chromosome8 (Build37)
Map Location 44,939,378 - 45,121,487
singlet/doubletdoublet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1, LOC100039673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506N20.T7 (MSMg01no506_n20.b1)MSMg01-506N20.TJ (MSMg01no506_n20.g1)
ACCAG581155AG581156
length764776
length of high quality
(start - end)		701 (45 - 745)654 (72 - 725)
definitionCHROMAT_FILE: MSMg01no506_n20.b1 PHD_FILE: MSMg01no506_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:12 2005CHROMAT_FILE: MSMg01no506_n20.g1 PHD_FILE: MSMg01no506_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,939,378 - 44,940,074)(45,120,834 - 45,121,487)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATCTGGGTTACACATTGTCTATATAGTGGTAGAGTCTGTTATCA
TCATTTTACAGAGAAACATAATAGGTAGTCAGAAAAACAGGCTGCATTCC
ACCAGCTGCCCTTCTGAACATTGAATCAAGTTGATTTTTGTTATTGTTTT
TTATTTGCTCAAGATTTTAAACTAGTCATACCATTTTAAACAGCCACCCT
GATAAGCGTCCTTTAATTTGCTTGGGTTTGATATTTTATTGGCACGTAAT
AACTGTTTCCATATATTACGTTTATCACTACCTTCCAGAGCTGTGATTAC
ATTTCAATTAGATTTGTGCAAAATGCTGAATTGCAAATTCTTTTCAAACA
AAATGAAATGGCCTATCATCCTAGCTCTACCCACTCAGACAGTTTGATTC
ATTTGACTTAATATACATGTAAAACAAATTGGTCTAGTAAATTTGCATAT
AAAACAGCACCAGCCCTAAAAGGCTCTAATGTAAACAATTAATTCCCTGT
TTTTATCTTGCAGAAACACTGGTTTCCTACAGAACAAAACCCAGCTCTGC
AATGTTTATATTTTGTCATAATGGCAGGGAGGAAAATATACAGGACACAA
ATAGCCTCCTTATGCTGCCTTGCCATCTAGTCTGTAAGCCATTTCAAATA
TTTTCACAATGTCTACTTGTGTTCACTAATATCAAGGGCACCAGAAGAGG
TGTTTTTGTTTGTT

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTATGCACTTGCTTTCTTGGCAGTAGCT
AAGTCTTATTTGTCTTAAAAGATGAGGATCAAGGCAAGGACAGCTGGTTT
TGTGCAAACAACAATTAAATGTGGTGTTCCTAAATGGAACCAGTAAATAA
GTAACCAAAGCATATGGTTCAGAGACCTCCCTTCTGTCACCAGAACATCT
ACACATGCTAAGTTAACATGTTAACTCCTAAAATCACCTCAGTCTCTTAA
AGTACCCAGAATAGGGGGAGAGAATTAATGTCGACTACCTGTGCTTCTTG
CTTACAGAAAGTCTGAGGTGGGACTTCATAGGCATGGCTGTCCACAGTTA
TTCTGAGTGTGGCAAGGACACAGAAGAAAGAGGCAAGCTCTTACCAGGAC
GTTTCACATCTGAAAAGGACCTTAAAGGAGTATGTCCTTCAACACTAGGC
ATTTATTGAAAGAGAAACAAGTTACTTAAACAAAATGATCAAGATGTGCT
TAGTTTCCTTCTATCTGTAAGGCTTATTTTAACCCCATAAATTGGAGATC
ATGTTTGTTTTAAAGGCAATGCTTTATTCTCCTTTATGGCACTGGACATC
AAATTGAGGACTTTGCTCACATAAGGCAAGCACTCTGTCACTGAGCTCAC
CCACCAACCAACCAATATTGTCTAAAATAACAGAAGCTATTTCTGCTGGC
TACCTAAATAAAAACATCTTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_n20.b1 MSMg01no506_n20.b1 CHROMAT_FILE:
MSMg01no506_n20.b1 PHD_FILE: MSMg01no506_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:12 2005
         (701 letters)



>mm_chr8_44939174_44940274
          Length = 1101

 Score = 1324 bits (685), Expect = 0.0
 Identities = 694/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatctgggttacacattgtctatatagtggtagagtctgttatcatcatttta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatctgggatacacattgtctatatagtggtagagtctgttatcatcatttta 264

                                                                       
Query: 65  cagagaaacataataggtagtcagaaaaacaggctgcattccaccagctgcccttctgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagaaacataataggtagtcagaaaaacaggctgcattccaccagctgcccttctgaa 324

                                                                       
Query: 125 cattgaatcaagttgatttttgttattgttttttatttgctcaagattttaaactagtca 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 cattgaatcaagttgatttttgttactgttttttatttgctcaagattttaaactagtca 384

                                                                       
Query: 185 taccattttaaacagccaccctgataagcgtcctttaatttgcttgggtttgatatttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccattttaaacagccaccctgataagcgtcctttaatttgcttgggtttgatatttta 444

                                                                       
Query: 245 ttggcacgtaataactgtttccatatattacgtttatcactaccttccagagctgtgatt 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggcacttaataactgtttccatatattacgtttatcactaccttccagagctgtgatt 504

                                                                       
Query: 305 acatttcaattagatttgtgcaaaatgctgaattgcaaattcttttcaaacaaaatgaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatttcaattagatttgtgcaaaatgctgaattgcaaattcttttcaaacaaaatgaaa 564

                                                                       
Query: 365 tggcctatcatcctagctctacccactcagacagtttgattcatttgacttaatatacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggcctatcatcctagctctacccactcagacagtttgattcatttgacttaatatacat 624

                                                                       
Query: 425 gtaaaacaaattggtctagtaaatttgcatataaaacagcaccagccctaaaaggctcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtaaaacaaattggtctagtaaatttgcatataaaacagcaccagccctaaaaggctcta 684

                                                                       
Query: 485 atgtaaacaattaattccctgtttttatcttgcagaaacactggtttcctacagaacaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtaaacaattaattccctgtttttatcttgcagaaacactggtttcctacagaacaaa 744

                                                                       
Query: 545 acccagctctgcaatgtttatattttgtcataatggcagggaggaaaatatacaggacac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acccagctctgcaatgtttatattttgtcataatggcagggaggaaaatatacaggacac 804

                                                                       
Query: 605 aaatagcctccttatgctgccttgccatctagtctgtaagccatttcaaatattttcaca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatagcctccttatgctgccttgccatctagtctgtaagccatttcaaatattttcaca 864

                                                
Query: 665 atgtctacttgtgttcactaatatcaagggcaccaga 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 865 atgtctacttgtgttcactaatatcaagggcaccaga 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_n20.g1 MSMg01no506_n20.g1 CHROMAT_FILE:
MSMg01no506_n20.g1 PHD_FILE: MSMg01no506_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:12 2005
         (654 letters)



>mm_chr8_45120727_45121780
          Length = 1054

 Score = 1249 bits (646), Expect = 0.0
 Identities = 652/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgcacttgctttcttggcagtagctaagtcttatttgtcttaaaagatgaggatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttatgcacttgctttcttggcagtagctaagtcttatttgtcttaaaagatgaggatca 702

                                                                       
Query: 61  aggcaaggacagctggttttgtgcaaacaacaattaaatgtggtgttcctaaatggaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aggcaaggacagctggttttgtgcaaacaacaattaaatgtggtgttcctaaatggaacc 642

                                                                       
Query: 121 agtaaataagtaaccaaagcatatggttcagagacctcccttctgtcaccagaacatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agtaaataagtaaccaaagcatatggttcagagacctcccttctgtcaccagaacatcta 582

                                                                       
Query: 181 cacatgctaagttaacatgttaactcctaaaatcacctcagtctcttaaagtacccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cacatgctaagttaacatgttaactcctaaaatcacctcagtctcttaaagtacccagaa 522

                                                                       
Query: 241 tagggggagagaattaatgtcgactacctgtgcttcttgcttacagaaagtctgaggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tagggggagagaattaatgtcgactacctgtgcttcttgcttacagaaagtctgaggtgg 462

                                                                       
Query: 301 gacttcataggcatggctgtccacagttattctgagtgtggcaaggacacagaagaaaga 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 461 gacttcataggcatggctgtccacagttattctgagtatggcaaggacacagaagaaaga 402

                                                                       
Query: 361 ggcaagctcttaccaggacgtttcacatctgaaaaggaccttaaaggagtatgtccttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggcaagctcttaccaggacgtttcacatctgaaaaggaccttaaaggagtatgtccttca 342

                                                                       
Query: 421 acactaggcatttattgaaagagaaacaagttacttaaacaaaatgatcaagatgtgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acactaggcatttattgaaagagaaacaagttacttaaacaaaatgatcaagatgtgctt 282

                                                                       
Query: 481 agtttccttctatctgtaaggcttattttaaccccataaattggagatcatgtttgtttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 281 agtttccttctatctgtaaggcttattttaaccccataaattggagatcgtgtttgtttt 222

                                                                       
Query: 541 aaaggcaatgctttattctcctttatggcactggacatcaaattgaggactttgctcaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaaggcaatgctttattctcctttatggcactggacatcaaattgaggactttgctcaca 162

                                                                 
Query: 601 taaggcaagcactctgtcactgagctcacccaccaaccaaccaatattgtctaa 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 taaggcaagcactctgtcactgagctcacccaccaaccaaccaatattgtctaa 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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