Query= MSMg01no506_p16.b1 MSMg01no506_p16.b1 CHROMAT_FILE:
MSMg01no506_p16.b1 PHD_FILE: MSMg01no506_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:21 2005
(721 letters)
>mm_chr8_49861648_49862768
Length = 1121
Score = 1340 bits (693), Expect = 0.0
Identities = 711/717 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagttttcatcttcccctcctccctcaaaaatagccatgtttcaggacgcaagg 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttttcaacatcccctcctccctcaaaaatagccatgtttcaggacgcaagg 263
Query: 64 attcagtgtctttctacaaatcagtaagtttaactatttgagcggtagtttttatagatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attcagtgtctttctacaaatcagtaagtttaactatttgagcggtagtttttatagatg 323
Query: 124 gttgtacagttggctccctaagaatctgccagatctcaagtaattgacatggtgagttta 183
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcgtacagttggctccctaagaatctgccagatctcaagtaattgacatggtgagttta 383
Query: 184 ttttcataatcacaccaactttcttctcaacttcagactgccgcctgatttttaatatgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttcataatcacaccaactttcttctcaacttcagactgccgcctgatttttaatatgc 443
Query: 244 ctttgtatacaatgcaaccgtatcatccagtcagacagggaatcaccgcatacatagaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctttgtatacaatgcaaccgtatcatccagtcagacagggaatcaccgcatacatagaag 503
Query: 304 acatgctgtagtggttaatatttaattacaacagagttaatcatagaagcacatctggat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatgctgtagtggttaatatttaattacaacagagttaatcatagaagcacatctggat 563
Query: 364 ctaacttattagcatctgccttcaaaaacattatctttgattcctaccaaaaaaaaaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaacttattagcatctgccttcaaaaacattatctttgattcctaccaaaaaaaaaaaa 623
Query: 424 tagacaaaaggcaaaatgaaagagtccacataatgtgcttgttcttcttggtaacaggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagacaaaaggcaaaatgaaagagtccacataatgtgcttgttcttcttggtaacaggag 683
Query: 484 tcacagctttcagccatgggttcaaagagctttattaatgttcgtggtgtctctttactc 543
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 684 tcacagctttcagccattggttcaaagagctttattaatgttcgtggtgtctccttgctc 743
Query: 544 cccaaaagacttagagctctcagtctcatcccagagaagcaaataaacttgaagagtcac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccaaaagacttagagctctcagtctcatcccagagaagcaaataaacttgaagagtcac 803
Query: 604 aaggccacctctgctggggatgaggatagacttccggagagacattgagggatggtacca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaggccacctctgctggggatgaggatagacttccggagagacattgagggatggtacca 863
Query: 664 agagcaggaccctccttgacaggctgcccctgagtcactctgtgtagcacgccactt 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agagcaggaccctccttgacaggctgcccctgagtcactctgtgtagcacgccactt 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no506_p16.g1 MSMg01no506_p16.g1 CHROMAT_FILE:
MSMg01no506_p16.g1 PHD_FILE: MSMg01no506_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:21 2005
(631 letters)
>mm_chr8_49999207_50000237
Length = 1031
Score = 870 bits (450), Expect = 0.0
Identities = 499/523 (95%), Gaps = 13/523 (2%)
Strand = Plus / Minus
Query: 99 tgctgggtgctgggtgctgggtgctgtgctgtgcacccctggcttgatggcgtgatctct 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgctgggtgctgggtgctgggtgctgtgctgtgcacccctggcttgatggcgtgatctct 463
Query: 159 atcagttactgtttttttcttcctttggaaggcccatcggagagactctctgccctgccc 218
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 462 atcagttactgtttttttcttcctttggaaggcccatcagagagactctctgccctgccc 403
Query: 219 gggagtcctttgcgaattccagttaatggcccaaagggactttactagtcagctttgctg 278
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 402 gggagtcctttgtgaattccagttaatggcccaaagggactttactagtcagttttgctg 343
Query: 279 gatgttttgagtgaccaatttaatcatattctctg------------tctctctctctgt 326
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 342 gatgttttgagtgaccaatttaatcatattctctgtctctctctgtctctctctctctgt 283
Query: 327 gtctgtctgtctctctctccctccctccctccttctccctcttctctccttgtctctctc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtctgtctgtctctctctccctccctccctccttctccctcttctctccttgtctctctc 223
Query: 387 cttcccttcccccctccctctttctcttctcttccccttcctctccaactccccctgctc 446
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 222 cttcccttccctcctccctctttctcctctcttccccttcctctccaactccccctcctc 163
Query: 447 catcccctccaccctctccctttccttgcccccccccccgattctgtgtatgtctcacta 506
|||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 162 catcccctcctccctctccctttcctt-ccccccccccccattctgtgtgtgtctcacta 104
Query: 507 tttattctcttactttggcctgctatatacctgatgaatacagtcatccaaagctaanag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 103 tttattctcttactttggcctgctatatacctgatgaatacagtcatccaaagctaaaag 44
Query: 567 ttaggcttctgctcatcgctttccacaccacacagcacacacc 609
|||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 43 ttaggcttctgctcatcgttttccacaccacacagcacacacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
