Query= MSMg01no507_a20.b1 MSMg01no507_a20.b1 CHROMAT_FILE:
MSMg01no507_a20.b1 PHD_FILE: MSMg01no507_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:27 2005
(565 letters)
>mm_chr8_23188871_23189835
Length = 965
Score = 895 bits (463), Expect = 0.0
Identities = 551/617 (89%), Gaps = 57/617 (9%)
Strand = Plus / Plus
Query: 6 gaattcttgatccccctgccttcctgcctgtaactctcaagtgttaggattatagatatg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gaattcttgatccccctgccttcctgcctgtaactctcaagtgttaggattatagatatg 208
Query: 66 tatcttggtgtgaaacaaacttacgattcaaccataaaacagaaaaaaatctgctacaca 125
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tatcttgatgtgaaacaaacttacgattcaaccataaaacagaaaaaaatctgctacaca 268
Query: 126 tagccatgcatgcatctctgcacacacatgcacacagcagaaaagggaaaaggcagacag 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tagccacgcatgcatctctgcacacacatgcacacagcagaaaagggaaaaggcagacag 328
Query: 186 agcccaaacaaatccatgtatcatgtacaacttggtctccttaactagtttctatgggcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcccaaacaaatccatgtatcatgtacaacttggtctccttaactagtttctatgggcc 388
Query: 246 atcttcttct-------------------------------------------------- 255
|||||||||
Sbjct: 389 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 448
Query: 256 ------tt-ttcttcttttttaagatttatttatttattatatgttagtacactgtagtt 308
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 449 ttcttcttcttcttcttttttaagatttatttatttattatatgttagtacactgtagct 508
Query: 309 gttttcaaacacaccagaaaaagggcatccaatctcattacagatggttttgagccacca 368
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 509 gttttcaaacacaccagaaaaagggcatccaatctcattacagatggttgtgagccacca 568
Query: 369 tgcggttgctgggatttgaactcagagcctttggaagagcagtcagtgctcttcaccgct 428
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 569 tgtggttgctgggatttgaactcagagccgttggaagagcagtcagtgctcttcactgct 628
Query: 429 gagccatctctccagccctatgggccatcttccatctcacttgtacccaacactactcac 488
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 629 gagccatctctccagccctatgggccatcttccatctcacttgtacacaacactactcac 688
Query: 489 atgtcatcttcatccgatcctggttccagctgttcatcatccaccatgatgcccgtggct 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atgtcatcttcatccgatcctggttccagctgttcatcatccaccatgatgcccgtggct 748
Query: 549 atttctaccttttcctg 565
|||||||||||||||||
Sbjct: 749 atttctaccttttcctg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_a20.g1 MSMg01no507_a20.g1 CHROMAT_FILE:
MSMg01no507_a20.g1 PHD_FILE: MSMg01no507_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:27 2005
(572 letters)
>mm_chr8_23359389_23360361
Length = 973
Score = 994 bits (514), Expect = 0.0
Identities = 560/576 (97%), Gaps = 7/576 (1%)
Strand = Plus / Minus
Query: 1 cacactcggtgaaaatgatctctcaaaaataaaaacaaagcagtcttttccaggcaaacg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 773 cacactcggtgaaaatgatctctcaaaaataaagacaaagcagtcttttccaggcaaacg 714
Query: 61 caggctaagagaactgataaccaacaagccttcagtacaatagggcacataaagacaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 caggctaagagaactgataaccaacaagccttcagtacaatagggcacataaagacaagc 654
Query: 121 cttacaaccaaagggaacagttccaaacacaagtcccagagagac-aaaaatgcttattt 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 653 cttacaaccaaagggaacagttccaaacacaagtcccagagagacaaaaaatgctgattt 594
Query: 180 ctttg-gttggtgcaaaaccaaccaaccaaacaaaaatcacaggttctaaaatacaacta 238
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctttgtgttggtgcaaagccaaccaaccaaacaaaaatcacaggttctaaaatacaacta 534
Query: 239 agtctaaactggacttttaccggggctataggactaaaaccacagtcaagtaaagcagat 298
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 533 agtctaaactggaattttaccggtgctataggactaaaaccacagtcaagtaaagcagat 474
Query: 299 gacaactaccaagcagtgagcgggagaggggaactgagagttctactaaacatttacctc 358
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 473 gacaactgccaagcagtgagcgggagaggggaactgagagttctagtaaacatttacctc 414
Query: 359 gtggatggagcaatagctgaaggcacgttagaaacaaccttagtgttacacataggaacc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 413 gtggatggagcaatagctgaaggcacgttagaaacaaccttagtgttacacataggaa-c 355
Query: 419 cacaaactgagcagcagtaatcgtctgtgtgggggtgtgtgagttcgtctatatacgtat 478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 354 cacaaactgagcagcagtaatcgtctgtgtgggggtgtgtgagtttgtctatatacgtat 295
Query: 479 gtgtgtgctgtttgaaaccaaaaactttatttatatatacacatgttagatatat--gta 536
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct: 294 gtgtgtgctgtttgaaaccaaaaactttatttatatatacacatgtta-a-atatgcgta 237
Query: 537 atacataaaagcatgtaggctaaaagtaaaaatgta 572
||||||||||||||||||||||||||||||| ||||
Sbjct: 236 atacataaaagcatgtaggctaaaagtaaaagtgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
