BAC Information

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BAC

Clone NameMSMg01-507C04
Chromosome8 (Build37)
Map Location 87,918,198 - 87,918,900
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik
Downstream gene4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507C04.T7 (MSMg01no507_c04.b1)MSMg01-507C04.TJ (MSMg01no507_c04.g1)
ACCAG581359AG581360
length7791,305
length of high quality
(start - end)
715 (36 - 750)---
definitionCHROMAT_FILE: MSMg01no507_c04.b1 PHD_FILE: MSMg01no507_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:34 2005CHROMAT_FILE: MSMg01no507_c04.g1 PHD_FILE: MSMg01no507_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGATCCGCGGAA
TTCCAGGAGAATCAGGGATACACAGAGCAGCCCTGTTCCAAAATAACAAC
AAAACAAAACAAAACAAAGAAAAGATCTGGAGCTGAGTATACAACTTGGC
GGTAATTGGCAGGGTAACCAGAGGCCACTGGGGCATGTGAAGTAGGTACC
TTTAGGGATGTTAGCCAGGTGCAGTTTTGATGGGGCACACAGACAGCTGT
ACCCACAGTTTGTACAAATGGCGCCCAAAGGCAGGTCTTGGATGTGGAGT
TGTTGGTGAAAGGACTTGAGCTGAGCCTATGTAACTTGTCCTGCTCTTGG
GTAACTCCAGCAGTCCTTTCCTAGGTCAGTTTGAATTTTAGAGAGATCTC
ATGGCTACCGTTTATGAAGCAAGCATTTTAAGGAAGGAATCCTTGAGATC
AAAGGAGTCAGATCCACTGGCTCTGGAGAGAAGAACTGGGACTCTCCATG
TATCCAAGGCAAGGATGGGGGACAGAAGTGCTGAGCCCTCACCTCCAGGC
AGATGGAGGCCTTTGGAAGGTGATCCTTGCCATTATCTACCTATCTGAGG
CCAAAATTTTCCTTTGCCCGGTTCCTAAGGCTTTTTCTTTAACATGATTG
TCTGTATTATTCCTTGTTTTTCTCTGGTGTGTGTCCAAATGGATGCCAGA
GGATTTTTTTTTTTTTTTTTGGTTACTGATTTAATGCAATCTTTGGAAGT
AGGGGCCCTGACATATTGGCACCTGTCCT
AGAGGATATAAAGCTATNGTGTTCGTCGTGCGCCGTTCTCTATTCCTCCC
ACACATAATGAATCTCCCCGANTTGGTTGGTGCTTTTCACTATATAAAAG
CACTGACACATAGCGCAAGATCAATATACTGTAATAATCTACCACACACC
CTCCTTATCCCTATCTTACCTTATACTAATAACAATTGCGCCCACTCACC
GTACTATCATCAATCTCATTTATATTATATATGTCTATGCACATGGTATT
GTCGTACACTGTAGTTGAAACTGGTGATGATATGTTGCTCGTGGCCTATC
ATACTCTATACACCTAAGCATCGTCAGCGGATACTACCCGCGCCGCTCTC
CTCTTTCCACACTCTCTACCTCCTCTATTATAATCGGCGCAACACGAGTA
ATAATTATAATAGAAAATATAAAAGAAAATTAAATCAAGACGTATATATC
GGAAACGCGGAACATCACAATCTACAATGAATACTGATAAACCGATCGAT
ATCAATGAAAAATAAAATTTACACCCGCGACATACATCTTGTATTCGTCG
ACTGATTTTCGACCAGTATTTTATGTGCTGCACGCGAGGTGAGATGATGC
TATGATCAGTGTGAACTCTTCAAATAAATACTATGCACACCGAAACCATG
CACGCGAGATATAATTAACTTACATAATCATAATAATACCGCATAGATAT
ATACCATNGCTAATTAAACGACAATGTACATTATTATATTATTCTACATA
TATAAAATATTCTACTAGACAACGATATTCTATATCTTCCAAAAATAATT
CAGTTAATATTCTGTTGATGTGCACCCAAATAGTCGTTATATATTGGATA
TAAAACATACAACTTATGAATTACAATTACATATTATGATTACGTCCACA
CCACAGCGCATATATACTCGCACGCTCGCATATGTGCAGCTGATGATACA
CGTTGTACACCATCAGACTATACATTGTCTATATATTATACACATCCNCA
CGCTATATTACGTCACTCGCGCGTTGTACTAAACACGTATNTACAATGTG
ATATCACTATATCTTATAGATACAAGATCAACACGAGATATACTACGCTA
CTCTATCTTCATATATACACTATGCTATCACGACACCTNTATNGTCTCTC
GTTTACTCTCANTNTAATCACGTATCTTCTCAGTATCTCTCTGATCTTAT
CTATGATCATACGTACTAACTCTCTGCTCTGTCTGTTATTCTCGTCTATG
TTTATATATATCAGTCAAACTATCACACAGATCTATATATAGCCTCATGT
GTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_c04.b1 MSMg01no507_c04.b1 CHROMAT_FILE:
MSMg01no507_c04.b1 PHD_FILE: MSMg01no507_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:34 2005
         (715 letters)



>mm_chr8_87917986_87919100
          Length = 1115

 Score = 1359 bits (703), Expect = 0.0
 Identities = 703/703 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattccaggagaatcagggatacacagagcagccctgttccaaaataacaacaaaacaa 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattccaggagaatcagggatacacagagcagccctgttccaaaataacaacaaaacaa 272

                                                                       
Query: 73  aacaaaacaaagaaaagatctggagctgagtatacaacttggcggtaattggcagggtaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aacaaaacaaagaaaagatctggagctgagtatacaacttggcggtaattggcagggtaa 332

                                                                       
Query: 133 ccagaggccactggggcatgtgaagtaggtacctttagggatgttagccaggtgcagttt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccagaggccactggggcatgtgaagtaggtacctttagggatgttagccaggtgcagttt 392

                                                                       
Query: 193 tgatggggcacacagacagctgtacccacagtttgtacaaatggcgcccaaaggcaggtc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgatggggcacacagacagctgtacccacagtttgtacaaatggcgcccaaaggcaggtc 452

                                                                       
Query: 253 ttggatgtggagttgttggtgaaaggacttgagctgagcctatgtaacttgtcctgctct 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttggatgtggagttgttggtgaaaggacttgagctgagcctatgtaacttgtcctgctct 512

                                                                       
Query: 313 tgggtaactccagcagtcctttcctaggtcagtttgaattttagagagatctcatggcta 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgggtaactccagcagtcctttcctaggtcagtttgaattttagagagatctcatggcta 572

                                                                       
Query: 373 ccgtttatgaagcaagcattttaaggaaggaatccttgagatcaaaggagtcagatccac 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccgtttatgaagcaagcattttaaggaaggaatccttgagatcaaaggagtcagatccac 632

                                                                       
Query: 433 tggctctggagagaagaactgggactctccatgtatccaaggcaaggatgggggacagaa 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tggctctggagagaagaactgggactctccatgtatccaaggcaaggatgggggacagaa 692

                                                                       
Query: 493 gtgctgagccctcacctccaggcagatggaggcctttggaaggtgatccttgccattatc 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gtgctgagccctcacctccaggcagatggaggcctttggaaggtgatccttgccattatc 752

                                                                       
Query: 553 tacctatctgaggccaaaattttcctttgcccggttcctaaggctttttctttaacatga 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tacctatctgaggccaaaattttcctttgcccggttcctaaggctttttctttaacatga 812

                                                                       
Query: 613 ttgtctgtattattccttgtttttctctggtgtgtgtccaaatggatgccagaggatttt 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ttgtctgtattattccttgtttttctctggtgtgtgtccaaatggatgccagaggatttt 872

                                                      
Query: 673 tttttttttttttggttactgatttaatgcaatctttggaagt 715
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tttttttttttttggttactgatttaatgcaatctttggaagt 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)