BAC Information

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BAC

Clone NameMSMg01-507I13
Chromosome8 (Build37)
Map Location 79,049,615 - 79,219,780
singlet/doubletdoublet
Overlap genenone
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507I13.T7 (MSMg01no507_i13.b1)MSMg01-507I13.TJ (MSMg01no507_i13.g1)
ACCAG581661AG581662
length765751
length of high quality
(start - end)		695 (69 - 763)634 (82 - 715)
definitionCHROMAT_FILE: MSMg01no507_i13.b1 PHD_FILE: MSMg01no507_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:07 2005CHROMAT_FILE: MSMg01no507_i13.g1 PHD_FILE: MSMg01no507_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,219,086 - 79,219,780)(79,049,615 - 79,050,248)
sequence
ACTCATAATTGCGGCGCTAAACGACTCACATATTCAGAAATCCGCGGAAT
TCCATAGGAGTGCCACACTCCTTTCTTTTTCTAGTCATGCTGGGTCCCTC
TAACACTCCTTTTAAAAGCATCTAATCAGGCCAGCCAGCAAAGCAGAAGA
AGTATGGTCTTCAGGGACTCAGTCTTACATCATAGAGTTGTAGAAGGATC
CATCGGAAGCTGAGAGATCCTAGATAAACATTCAGTGCAAATGGGGCTTA
CCTCTTGAGAAAGTCTTGTGAGGAGACATGTGAGGTAGGAGGGATGGTAG
ACAGCCAGAGCTTCTCTGTGTTCTGTCTGGGACGTGGAGGACAGGTGGGA
TGATTATTCTCATAGATGCCCGAGCCAGAAGTTACACTGAGACTCAGGGC
CATTGTGAGGGGTGTGTCATGGAAACTCTGCCAGAGGTATCCCTGTTCAA
ACGGCAAAGGACACAGGAAAGATGGAGAGGAAAATGAGGTCCATTCATAT
GTGCTCTAACAGTAGAGGGACCAAGATACAGAGTCTGAGATTTGACACTG
TTGTATTTTCGAGACCAAATCTCATGTTCCAAGAAGGACAGATGAAGTGC
TGGTGGTAGGCTTAGTTGGAATAGATTAGAAAAATATTGCACACCCATAT
GACATGTTAGCAAGCTAGTGCCTTCACTGTCATCCATGGATCCTACTTGC
TTCCCAAATGCTGCACATGGCCATTCATCCTTATCACCCAGAGAGCATTG
CAGATGGAACAAGTA

NNNNNNACAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCAGATGGAGTACCGG
CACAGATCAAGTCTCAGGAATTCGCTCAGAAAAACCAACCTTAGTTCTTC
AGACCAGTGGAAAACAAAACAATGGGAAGACAGGACAGGGAAGTCGTAGT
TATTAAATTTCCTCCTAAGTGTCTTTAAGAGTATTTTCTGAAAACATCAT
CTAGATTTTCCTATATTAAAAATTAGTGATAAACAATAGTTCCCTAAAGA
TAATGATTAGGCATATAAAACCAAAATGATCAAACTTTCCTTCCAGGTAC
TGCTGGAGGATGAAAGTCTATCTGATAATGAAATGATTTGCCCCCATGTC
AGGAAAAAGGGGGGAGGGACTAAAACAGCATCAGAATCCTGCATGAAAGG
CCCAAAAGACTCTTAAGAATATTACAAAAATGGACAATCCTGCCAAATTA
AATGTAATGGTCTGGAGGAGACTTTCTGTATATATTAGCTCCAATTCTGT
GACCCTTCCAAAGAAGATGGGACCTCAAGAAAAACTACAATTATCTTCTC
TGAGCCTAAGGCATATTGGAGTCCTGGTGACCACTGCAATGACTTCATAA
TGTAAAAGTAATCTGGTGACGCTAGACAGCTTTCTCATCATCCTGCATTT
TCCTCTATCAAAGGAAAGGAAAGAAAAATGCTTAAATGTGATATGGCCCT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_i13.b1 MSMg01no507_i13.b1 CHROMAT_FILE:
MSMg01no507_i13.b1 PHD_FILE: MSMg01no507_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:07 2005
         (695 letters)



>mm_chr8_79218737_79219831
          Length = 1095

 Score = 1212 bits (627), Expect = 0.0
 Identities = 678/695 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    tcctttctttttctagtcatgctgggtccctctaacactccttttaaaagcatctaatca 60
            ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1044 tcctttccttttctagtcatgctgggtccctctaaaactccttttaaaagcatctaatca 985

                                                                        
Query: 61   ggccagccagcaaagcagaagaagtatggtcttcagggactcagtcttacatcatagagt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  ggccagccagcaaagcagaagaagtatggtcttcagggactcagtcttacatcatagagt 925

                                                                        
Query: 121  tgtagaaggatccatcggaagctgagagatcctagataaacattcagtgcaaatggggct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  tgtagaaggatccatcggaagctgagagatcctagataaacattcagtgcaaatggggct 865

                                                                        
Query: 181  tacctcttgagaaagtcttgtgaggagacatgtgaggtaggagggatggtagacagccag 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 864  tacctcttgagaaagtcttgtgaggagacatgtgaggtaggagggatggtagacagcctg 805

                                                                        
Query: 241  agcttctctgtgttctgtctgggacgtggaggacaggtgggatgattattctcatagatg 300
            |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  agcttctctgagatctgtctgggacgtggaggacaggtgggatgattattctcatagatg 745

                                                                        
Query: 301  cccgagccagaagttacactgagactcagggccattgtgaggggtgtgtcatggaaactc 360
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  cccgagccagaaattacactgagactcagggccattgtgaggggtgtgtcatggaaactc 685

                                                                        
Query: 361  tgccagaggtatccctgttcaaacggcaaaggacacaggaaagatggagaggaaaatgag 420
            |||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684  tgccagagctatccctattaaaatggcaaaggacacaggaaagatggagaggaaaatgag 625

                                                                        
Query: 421  gtccattcatatgtgctctaacagtagagggaccaagatacagagtctgagatttgacac 480
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624  gtccattcatacgtgctctaacagtagagggaccaagatacagagtctgagattcgacac 565

                                                                        
Query: 481  tgttgtattttcgagaccaaatctcatgttccaagaaggacagatgaagtgctggtggta 540
            | |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  tattgtgttttagagaccaaatctcatgttccaagaaggacagatgaagtgctggtggta 505

                                                                        
Query: 541  ggcttagttggaatagattagaaaaatattgcacacccatatgacatgttagcaagctag 600
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504  ggcttagttggaatagattagaaaaatattgcacacccatatgacatgtcagcaagctag 445

                                                                        
Query: 601  tgccttcactgtcatccatggatcctacttgcttcccaaatgctgcacatggccattcat 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444  tgccttcactgtcatccatggatcctacttgcttcccaaatgctgcacatggccattcat 385

                                               
Query: 661  ccttatcacccagagagcattgcagatggaacaag 695
            || ||||||||||||||||||||||||||||||||
Sbjct: 384  ccatatcacccagagagcattgcagatggaacaag 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_i13.g1 MSMg01no507_i13.g1 CHROMAT_FILE:
MSMg01no507_i13.g1 PHD_FILE: MSMg01no507_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:07 2005
         (634 letters)



>mm_chr8_79049415_79050448
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcagatggagtaccggcacagatcaagtctcaggaattcgctcagaaaaaccaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcagatggagtaccggcacagatcaagtctcaggaattcgctcagaaaaaccaacct 260

                                                                       
Query: 61  tagttcttcagaccagtggaaaacaaaacaatgggaagacaggacagggaagtcgtagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttcttcagaccagtggaaaacaaaacaatgggaagacaggacagggaagtcgtagtt 320

                                                                       
Query: 121 attaaatttcctcctaagtgtctttaagagtattttctgaaaacatcatctagattttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaatttcctcctaagtgtctttaagagtattttctgaaaacatcatctagattttcc 380

                                                                       
Query: 181 tatattaaaaattagtgataaacaatagttccctaaagataatgattaggcatataaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatattaaaaattagtgataaacaatagttccctaaagataatgattaggcatataaaac 440

                                                                       
Query: 241 caaaatgatcaaactttccttccaggtactgctggaggatgaaagtctatctgataatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaatgatcaaactttccttccaggtactgctggaggatgaaagtctatctgataatga 500

                                                                       
Query: 301 aatgatttgcccccatgtcaggaaaaaggggggagggactaaaacagcatcagaatcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgatttgcccccatgtcaggaaaaaggggggagggactaaaacagcatcagaatcctg 560

                                                                       
Query: 361 catgaaaggcccaaaagactcttaagaatattacaaaaatggacaatcctgccaaattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgaaaggcccaaaagactcttaagaatattacaaaaatggacaatcctgccaaattaa 620

                                                                       
Query: 421 atgtaatggtctggaggagactttctgtatatattagctccaattctgtgacccttccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtaatggtctggaggagactttctgtatatattagctccaattctgtgacccttccaa 680

                                                                       
Query: 481 agaagatgggacctcaagaaaaactacaattatcttctctgagcctaaggcatattggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaagatgggacctcaagaaaaactacaattatcttctctgagcctaaggcatattggag 740

                                                                       
Query: 541 tcctggtgaccactgcaatgacttcataatgtaaaagtaatctggtgacgctagacagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctggtgaccactgcaatgacttcataatgtaaaagtaatctggtgacgctagacagct 800

                                             
Query: 601 ttctcatcatcctgcattttcctctatcaaagga 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctcatcatcctgcattttcctctatcaaagga 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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