Query= MSMg01no507_k18.b1 MSMg01no507_k18.b1 CHROMAT_FILE:
MSMg01no507_k18.b1 PHD_FILE: MSMg01no507_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:18 2005
(667 letters)
>mm_chr8_27218275_27219340
Length = 1066
Score = 1245 bits (644), Expect = 0.0
Identities = 659/664 (99%), Gaps = 2/664 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactatgtgttccaggcttgccttgaactcacagatctatcagcctctgtgtcc 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggaattcactatgtgaaccaggcttgccttgaactcacagatctatcagcctctgtgtcc 635
Query: 64 tgagtgctgaaactaaaggtgtacaccacacctggcagggcctgtgattcttggtgtgcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgagtgctgaaactaaaggtgtacaccacacctggcagggcctgtgattcttggtgtgcc 575
Query: 124 tacatgcctgtgcctaggaacagttaatacattgccctgatctaaatttaagttcctttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tacatgcctgtgcctaggaacagttaatacattgccctgatctaaatttaagttcctttc 515
Query: 184 acatttgattttttttacaattttcattgtgtatattctttctccatggtagtgtagtgt 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acatttga-tttttttacaattttcattgtgtatattctttctccatggtagtgtagtgt 456
Query: 244 atatacataggggtgaacatatttcatcccttctaccttcctgccctctaatttctcacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atatacataggggtgaacatatttcatcccttctaccttcctgccctctaatttctcacc 396
Query: 304 gtctcccctcccactactcccctagatgggtttacttttgctgccatgtctctataaact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtctcccctcccactactcccctagatgggtttacttttgctgccatgtctctataaact 336
Query: 364 tgattttatgtatcagtgtaaagtttaggaagcaaagaatggaaacagacaatatttgtc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgattttatgtatcagtgtaaagtttaggaagcaaagaatggaaacagacaatatttgtc 276
Query: 424 cttctgatgctgacttaactcatttcctccagttgcatctattgttctataaatattatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cttctgatgctgacttaactcatttcctccagttgcatctattgttctataaatattatg 216
Query: 484 gcttcattattcttcatgctgaaaaataaatccattatgtatgtaccacactttgttttt 543
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 215 gcttcattattcttcatgctgaaaaatagatccattatgtatgtaccacactttgttttt 156
Query: 544 gttagatgttttgagtataattttttctttcttttttttttgaggtcataatatgattac 603
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 155 gttagatgttttgagtataattttttctttc-tttttttttgaggtcataatatgattac 97
Query: 604 atcatttctcccttccatttcctccctccaaaccctcccatatttgcctcctttctcttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atcatttctcccttccatttcctccctccaaaccctcccatatttgcctcctttctcttt 37
Query: 664 caag 667
||||
Sbjct: 36 caag 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_k18.g1 MSMg01no507_k18.g1 CHROMAT_FILE:
MSMg01no507_k18.g1 PHD_FILE: MSMg01no507_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:18 2005
(470 letters)
>mm_chr8_27086555_27087424
Length = 870
Score = 886 bits (458), Expect = 0.0
Identities = 467/470 (99%)
Strand = Plus / Plus
Query: 1 ctattttttcacccttccccctggtgaattcggagagggacagagcacccagccccaagg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctattttttcacccttccccctggtgaattcggagacggacagagcacccagccccaagg 260
Query: 61 tccttcaaccgaacctgggaagccagacccgggtcgcggctcctgcgacgccggcactgc 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttcaactgaacctgggaagccagacccgggtcgcggctcctgcgacgccggcactgc 320
Query: 121 ggtccaccccagcgtggaccgggcgcgacgctcaagtcctgcgccccgcgggccgtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtccaccccagcgtggaccgggcgcgacgctcaagtcctgcgccccgcgggccgtgggg 380
Query: 181 aggtccggggcaggcccacgcacggtccccgctacccctagccgtgggggccgctcgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtccggggcaggcccacgcacggtccccgctacccctagccgtgggggccgctcgctc 440
Query: 241 acctggctccgcccggcggccgggggccagcagcgtggcgctcagcaccgacccggccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctggctccgcccggcggccgggggccagcagcgtggcgctcagcaccgacccggccag 500
Query: 301 cagcagcgctgccagcgccgggcccgcgcccatgcctcccacagcctctctccgggagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcagcgctgccagcgccgggcccgcgcccatgcctcccacagcctctctccgggagtt 560
Query: 361 gcgctctgtctccgcagccgagctgcgctcttctgcccggcgcctgcgcgagctcgaccc 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgctctgtccccgcagccgagctgcgctcttctgcccggcgcctgcgcgagctcgaccc 620
Query: 421 gcccgtcatcgcccgctcccgtggcgtcaccgctcctgtcccgcagggga 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccgtcatcgcccgctcccgtggcgtcaccgctcctgtcccgcagggga 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
