BAC Information

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BAC

Clone NameMSMg01-508A22
Chromosome8 (Build37)
Map Location 28,316,766 - 28,317,119
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1
Downstream geneAdrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422, LOC666430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508A22.T7 (MSMg01no508_a22.b1)MSMg01-508A22.TJ (MSMg01no508_a22.g1)
ACCAG582059AG582060
length764783
length of high quality
(start - end)		572 (53 - 624)355 (83 - 437)
definitionCHROMAT_FILE: MSMg01no508_a22.b1 PHD_FILE: MSMg01no508_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:50 2005CHROMAT_FILE: MSMg01no508_a22.g1 PHD_FILE: MSMg01no508_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATCTTTCCAATCTTTTATCATGAATGGATGTTGGA
TTTTGTCAAATGCTTTCTCAGCATCTAACGAGACGATCATGTGGTTTTTG
TCTTTGAGTTTGTTTATATACTAGATTACATTGATGGATTTCTGTATATT
GAACCATCTCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGA
TTGTTTTGATGTGCTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATT
TTTGCATCGATATTCATAAGGGAAATTGATCTGAAGTTCTCTATCTTTGT
TGGGTCTTTTTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATG
AGTTGGGTAGAGAACCTTCTACTTCTATCTTGTGGAATAGTTTGTGAAGA
ACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCC
GTCTGGTCCTGTGCTTTTTTTGGCTGGGAGACTATTAATAATTGCTTCTA
TTTCTTTAGGGTATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTC
AACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTT
TTCCAGGTTTGTCGAGTATAGCCTTTTGTAGAANGATATGATGGTGTTTT
GGATTCTTCANGATCTGTTGTATGTCTCCCTTTTCATTCTGATTTTGTAA
TTAAGATTTTGTCC

NNNNNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAATCGAACCCAGGA
CCTCTGGAAGTGGAGCGTCTTACTCATCTCTCTACTCCCACTCCTCCCCA
CCCCCTCCGCTTGTGCCCCTCGCTGTCACCCCCTTCCCGCCACAACCTTT
TATATACTGTACACAAAGACCACGGGGAGGTCCGCCGAGTAGGGGCTGGC
CGTTCCCTCCCTCCACAACCCTCAGCTGAGCCACGGCCAGCTCAGGCTGA
GAGTGCCCTTGGTGAAGAGAGGAACCTGCGGTTCCCCAAAGCTCCGCTGT
GGAGCCAAGGCATCTGCTGGGCTCGCAGGCTGGGTCGGCTGTGAGCTTTG
CAGCCCTCAGCGGTCTAGACGCGCCTGAGGCAGCTGAAGACACAGGTGAC
TTGAGTGGACGGGCAGAGGCGGGGCCCGGGCAGCCACCCTTGGTAGCAGC
TCGCGGCGGAGGTCGTAAGGATGCTACCGAAAGCCCACCTTCCTCAATCC
ACCACTGTCCTCTCTGCGCCTCCCCTTCCGCTCTCCTGAGGCTTGAATTT
AGGGAAAAGCCCTGCGGGTGGGGGTGGGAAGAAGGAGAAANTTTTTNNTT
NNNTNNTTNNNTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNNNTTTTTNTTTNNTTTTTTTNTTTNTTTNTNNTTTNNTTNTTTTTTTT
TTTTTNTTTTTNNTTTTNTNTTTTTTTTTGTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_a22.g1 MSMg01no508_a22.g1 CHROMAT_FILE:
MSMg01no508_a22.g1 PHD_FILE: MSMg01no508_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:50 2005
         (355 letters)



>mm_chr8_28316566_28317320
          Length = 755

 Score =  654 bits (338), Expect = 0.0
 Identities = 350/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaatcgaacccaggacctctggaagtggagcgtcttactcatctctctactcccact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tggaaatcgaacccaggacctctggaagtggagcgtcttactcatctctccactcccact 260

                                                                       
Query: 61  cctccccaccccctccgcttgtgcccctcgctgtcacccccttcccgccacaacctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccccaccccctccgcttgtgcccctcgctgtcacccccttcccgccacaacctttta 320

                                                                       
Query: 121 tatactgtacacaaagaccacggggaggtccgccgagtaggggctggccgttccctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tatactgtacacaaagaccacggggaggtccgccgagtaggggctggccgttcactccct 380

                                                                       
Query: 181 ccacaaccctcagctgagccacggccagctcaggctgagagtgcccttggtgaagagagg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacaaacctcagctgagccacggccagctcaggctgagagtgcccttggtgaagagagg 440

                                                                       
Query: 241 aacctgcggttccccaaagctccgctgtggagccaaggcatctgctgggctcgcaggctg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aacctgcggttccccaaagctccgctgtggagccacggcatctgctgggctcgcaggctg 500

                                                                 
Query: 301 ggtcggctgtgagctttgcagccctcagcggtctagacgcgcctgaggcagctg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcggctgtgagctttgcagccctcagcggtctagacgcgcctgaggcagctg 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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