BAC Information

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BAC

Clone NameMSMg01-508F01
Chromosome8 (Build37)
Map Location 18,974,808 - 18,975,425
singlet/doubletsinglet
Overlap geneDefb40
Upstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5
Downstream geneDefb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508F01.T7 (MSMg01no508_f01.b1)MSMg01-508F01.TJ (MSMg01no508_f01.g1)
ACCAG582257AG582258
length762756
length of high quality
(start - end)		120 (97 - 216)618 (81 - 698)
definitionCHROMAT_FILE: MSMg01no508_f01.b1 PHD_FILE: MSMg01no508_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:11 2005CHROMAT_FILE: MSMg01no508_f01.g1 PHD_FILE: MSMg01no508_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATTTTATCTTTTACTTGTTTATTTCCCCTTTCCCCCCTCTCCTGCT
CACCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTTGACTATGGAGATTCCCCACAGATACTTAAAGAACAGCCAA
GTTACATTCATATGCAAGAATTTACCAAGGCCTAGGAAATAGGGGGGGTG
GGTGTGGTATTACATTATTCATGAGAAAGTCTGCTAGAGCAGAACCCCCT
GGTGCTAGCTTTCACAGGCTGAAAGGGAGTACCCCAATTGGGGACTAGGG
GGGGGAAATCCCTTTAACCCTTTNNNCCTTTTTCCCCTTCCNNNCTTTTA
AGGGGGAACCCCCTTGAGGGCCGGGGGTTGTGTTTTTATACCTTTTTTTA
CGTGGGGGGGAAAAAAAAGAGGCCCTTGGTGTTTTTTTTATACCACCCNC
CTCCCTTTTGCTCTCGTCTTGTTATTTCATTATCCCCTTTTTCTCCTCAC
TTTTGTTTTATGTTTTCTTATTTCTCCTCTTTTTTTATATCTCACTTTTC
CTTTTCCCCCATATGGCTTTTTCCTGTTTTTTTACTTATACGTCTGCCCG
CTATTTTATTTTTAATCCCCCGTAGCCTACTTCCATATTACTTATCTTCT
CTACATCTTACCTTTTTTTATATTGCACTCTATTCATTCTTTAAATTTTA
TTTATAGTCCTTACTCCCTATTTGATTATTCTACCTCCCTTTCTTCTCCC
CCTTTATCTTTT

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAGTAAGACCTATAG
AATAAGACCATGTCTCAAAATTAATAGAAAAGAAATTATCCCCTATTTGC
TCTTTCTAGTGTAATAACCACAAATATACATGGCTTTTGAGCTATGGGAT
TCTCCCTGGTAAGTTAGTTTAAGACAGCTCATATTTTATTGGACATCCAG
AGTATCAGTTGTGGAACTTTTTCTTTAAATAATAAAATTTGTGTAGAAGT
CCTGTGCCTTCATCAAGCATGCTAAACGTCACTGCAGCTATAGAAAGAAT
CTGAGGTTTTTCTGTTCTTTTCTTTCAGTTGCTGTTCTTGACACAATAAA
ATGTCTCCAAGGAAACAACAACTGTCACATTCAGAAATGCCCATGGTTTT
TACTTCAAGTTAGCACCTGTTATAAAGGAAAGGGCAGATGTTGCCAAAAA
CGCCGTTGGTTTGCCAGAAGTCATGTGTACCATGTGTAACCATTGCTTTA
ATAAAGGAAAAAACCCGGAGGTGTAGCTTCTTCATACCAAAATGACTTTT
CTATAAATCTGTATTGTGTTAAGAAAATGTGAATATTTCAGGGCACCTGC
ATCAAAGAACAGCCCAGACACCCCTGTCTTCTTAAGAAAAAAATATGGCC
AAGAATTAAGTTAATGTGATTCCATTTGATTTTTCAAGAAATGTACTATT
GAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_f01.g1 MSMg01no508_f01.g1 CHROMAT_FILE:
MSMg01no508_f01.g1 PHD_FILE: MSMg01no508_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:11 2005
         (618 letters)



>mm_chr8_18974608_18975625
          Length = 1018

 Score = 1143 bits (591), Expect = 0.0
 Identities = 612/619 (98%), Gaps = 2/619 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagccagtaagacctatagaataagaccatgtctcaaaattaatagaaaagaaattatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 caagccagtaagacctatagaataagaccatgtctcaaaattaatagaaaagaaattatc 759

                                                                       
Query: 61  ccctatttgctctttctagtgtaataaccacaaatatacatggcttttgagcta-tggga 119
           | |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||
Sbjct: 758 ctctatttgctctttctagtgtaataaccacaaatatacatggcttttgag-gagtggga 700

                                                                       
Query: 120 ttctccctggtaagttagtttaagacagctcatattttattggacatccagagtatcagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttctccctggtaagttagtttaagacagctcatattttattggacatccagagtatcagt 640

                                                                       
Query: 180 tgtggaactttttctttaaataataaaatttgtgtagaagtcctgtgccttcatcaagca 239
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 639 tgtggaactttttctttaaataataaaatttgtgtagaactcctgtgccttcatcaagca 580

                                                                       
Query: 240 tgctaaacgtcactgcagctatagaaagaatctgaggtttttctgttcttttctttcagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgctaaacgtcactgcagctatagaaagaatctgaggtttttctgttcttttctttcagt 520

                                                                       
Query: 300 tgctgttcttgacacaataaaatgtctccaaggaaacaacaactgtcacattcagaaatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgctgttcttgacacaataaaatgtctccaaggaaacaacaactgtcacattcagaaatg 460

                                                                       
Query: 360 cccatggtttttacttcaagttagcacctgttataaaggaaagggcagatgttgccaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cccatggtttttacttcaagttagcacctgttataaaggaaagggcagatgttgccaaaa 400

                                                                       
Query: 420 acgccgttggtttgccagaagtcatgtgtaccatgtgtaaccattgctttaataaaggaa 479
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acgccgttggtttgccagaaatcatgtgtaccatgtgtaaccattgctttaataaaggaa 340

                                                                       
Query: 480 aaaacccggaggtgtagcttcttcataccaaaatgacttttctataaatctgtattgtgt 539
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaaacccagaggtgtagcttcttcataccaaaatgacttttctataaatctgtattgtgt 280

                                                                       
Query: 540 taagaaaatgtgaatatttcagggcacctgcatcaaagaacagcccagacacccctgtct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taagaaaatgtgaatatttcagggcacctgcatcaaagaacagcccagacacccctgtct 220

                              
Query: 600 tcttaagaaaaaaatatgg 618
           |||||||||||||||||||
Sbjct: 219 tcttaagaaaaaaatatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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